| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00049966m |
| Family | GT9 |
| Protein Properties | Length: 478 Molecular Weight: 52531 Isoelectric Point: 6.8916 |
| Chromosome | Chromosome/Scaffold: 068896 Start: 1779 End: 4089 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT9 | 200 | 448 | 5.3e-23 |
| LKNRYYDLILSTRLAGIGHALFLFMSSARDKIGYVYPNVNSVGAGLFLTEMFKAPTTNLSDGGYHMYKEMLEWIGRPAKNVPQQPTPPLRVSISKKLRAY VEGKYDSAGVQKGKYVVVHGIASDSVASMKSRGDDDCLLPLEHWAQIAKEISSDDKGLKPLFVIPHEKHREEIEEEVGEDTNILFLTTPGQLTCLINDSA GVVATNTAAVQLANARNKPCVALFSSAEKARLFLPYMEDKGSCTVITSA | |||
| Full Sequence |
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| Protein Sequence Length: 478 Download |
| MQAPTMSTSM ATTPATTHAV APAPAKPPAP RPCCNHLLLL PSTSHRHRRG SIVARSAKKR 60 NPWLDPFDDG PDEEFDYQGM FAGGKQEEDP RPPEDPANPY GFLRFPQGYN PELDSLASKV 120 RGDVRRACCV VSGGVYENVL FFPVVQMLKD RYPGVVVDVV TSARGKQVYE MCKNVRYATV 180 YDPDDDWPEP AEYTHQLGIL KNRYYDLILS TRLAGIGHAL FLFMSSARDK IGYVYPNVNS 240 VGAGLFLTEM FKAPTTNLSD GGYHMYKEML EWIGRPAKNV PQQPTPPLRV SISKKLRAYV 300 EGKYDSAGVQ KGKYVVVHGI ASDSVASMKS RGDDDCLLPL EHWAQIAKEI SSDDKGLKPL 360 FVIPHEKHRE EIEEEVGEDT NILFLTTPGQ LTCLINDSAG VVATNTAAVQ LANARNKPCV 420 ALFSSAEKAR LFLPYMEDKG SCTVITSATG KLIDIDVEAV KKAVKDFEPA PSFAMAK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03789 | GT1_LPS_heptosyltransferase | 1.0e-5 | 139 | 233 | 95 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| COG0859 | RfaF | 4.0e-24 | 124 | 472 | 360 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC83246.1 | 0 | 6 | 477 | 1 | 461 | hypothetical protein OsI_28562 [Oryza sativa Indica Group] |
| GenBank | EEE68378.1 | 0 | 6 | 477 | 1 | 425 | hypothetical protein OsJ_26704 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061432.1 | 0 | 1 | 477 | 1 | 468 | Os08g0276100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142788.1 | 0 | 1 | 477 | 1 | 465 | hypothetical protein LOC100275158 [Zea mays] |
| RefSeq | XP_002332075.1 | 0 | 10 | 468 | 1 | 459 | predicted protein [Populus trichocarpa] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC878039 | 272 | 94 | 365 | 0 |
| EE170514 | 272 | 94 | 365 | 0 |
| EE046780 | 269 | 94 | 362 | 0 |
| EE026840 | 268 | 93 | 360 | 0 |
| DN149044 | 245 | 94 | 338 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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