CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00050038m
FamilyGT4
Protein PropertiesLength: 421 Molecular Weight: 46373.6 Isoelectric Point: 7.9033
ChromosomeChromosome/Scaffold: 067788 Start: 1861 End: 4547
DescriptionUDP-Glycosyltransferase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT42253885.1e-40
  FLSINRFERKKNLDLAISAFALLCSVASTLPGDALQDATLTIAGGYDKRLKENVDYLEELKRLAVTEGVSGQVKFVTSCSTSERNELLSNCLCVLYTPKD
  EHFGIVPLEAMAAHKPVIACNSGGPVETVVNEVTGFLCDPSPTEFSKAMLKLVNDHDLTVRMGK
Full Sequence
Protein Sequence     Length: 421     Download
MAAAAGGGAG GSSASGTRTR KLKVAVIHPD LGIGGAERLI VDAACQLASH RHDVHVFTSH    60
HDKNRCFEET VSGPFAVTVY GDFLPRHVFY RFHAVCAYLR CIFVALCVLL WWPSFDVILV    120
DQVSVVIPLL KVKSSSKIVF YCHFPDLLLA QHSTMLRRLY RKPIDMIEEA TTGMANLILV    180
NSKFTAATFA RTFRGLHARG IEPGVLYPAV SVEQFHEPHA YKLNFLSINR FERKKNLDLA    240
ISAFALLCSV ASTLPGDALQ DATLTIAGGY DKRLKENVDY LEELKRLAVT EGVSGQVKFV    300
TSCSTSERNE LLSNCLCVLY TPKDEHFGIV PLEAMAAHKP VIACNSGGPV ETVVNEVTGF    360
LCDPSPTEFS KAMLKLVNDH DLTVRMGKQA RDHVVQKFST KTFGDLLNSY ILNVFHDRME    420

Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00534Glycos_transf_14.0e-33225393170+
cd03811GT1_WabH_like8.0e-3523399394+
COG0438RfaG6.0e-3620418403+
cd03801GT1_YqgM_like1.0e-4623399392+
cd03805GT1_ALG2_like022405397+
Gene Ontology
GO TermDescription
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACU21459.10194146401unknown [Glycine max]
GenBankEAY95346.101542013418hypothetical protein OsI_17177 [Oryza sativa Indica Group]
RefSeqNP_001053699.101542013418Os04g0589600 [Oryza sativa (japonica cultivar-group)]
RefSeqXP_002317454.10204143407predicted protein [Populus trichocarpa]
RefSeqXP_002447012.101442012418hypothetical protein SORBIDRAFT_06g026860 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2f9f_A3e-2022538126164A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a
PDB2jjm_L0.00000008310417280388A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB2jjm_K0.00000008310417280388A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB2jjm_J0.00000008310417280388A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
PDB2jjm_I0.00000008310417280388A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558.
Metabolic Pathways
Pathway NameReactionECProtein Name
dolichyl-diphosphooligosaccharide biosynthesisRXN-5462EC-2.4.1.132GDP-Man:Man1GlcNAc2-PP-Dol α-1,3-mannosyltransferase
dolichyl-diphosphooligosaccharide biosynthesisRXN-5463EC-2.4.1.257GDP-Man:Man2GlcNAc2-PP-Dol α-1,6-mannosyltransferase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO874725340173530
GO851037295173110
CN129110268172840
GO848903319173320
GO865623275172910
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_021_00182.1Aquca_021_00182.2Aquca_021_00182.3
Arabidopsis lyrata477043
Arabidopsis thalianaAT1G78800.1
Brachypodium distachyonBradi5g19840.1
Brassica rapaBra035064
Carica papayaevm.model.supercontig_77.17
Capsella rubellaCarubv10022022m
Chlamydomonas reinhardtiig1920.t1
Citrus clementinaCiclev10022599mCiclev10020399m
Citrus sinensisorange1.1g036860m
Cucumis sativusCucsa.220170.2Cucsa.273740.2Cucsa.273740.1Cucsa.220170.1
Eucalyptus grandisEucgr.F01245.1
Fragaria vescamrna27271.1-v1.0-hybrid
Glycine maxGlyma12g35950.2Glyma12g35950.1Glyma13g34430.1Glyma13g34430.2
Gossypium raimondiiGorai.002G054000.2Gorai.002G054000.1
Linum usitatissimumLus10037008Lus10015797
Malus domesticaMDP0000319369MDP0000185482
Manihot esculentacassava4.1_008785m
Medicago truncatulaMedtr1g104880.1
Mimulus guttatusmgv1a007424m
Oryza sativaLOC_Os04g49960.1
Panicum virgatumPavirv00018845mPavirv00056995mPavirv00004378m
Physcomitrella patensPp1s246_77V6.1
Phaseolus vulgarisPhvul.005G081600.1
Picea abiesMA_499839g0010
Populus trichocarpaPotri.011G109000.1
Prunus persicappa006490mppa006502m
Ricinus communis29681.m001322
Setaria italicaSi017356mSi013830mSi010219m
Selaginella moellendorffii419620
Sorghum bicolorSb06g026860.1
Thellungiella halophilaThhalv10019736mThhalv10007837m
Vitis viniferaGSVIVT01014186001
Volvox carteriVocar20014584m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny