| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00050693m |
| Family | GH2 |
| Protein Properties | Length: 782 Molecular Weight: 89008.8 Isoelectric Point: 5.9772 |
| Chromosome | Chromosome/Scaffold: 068831 Start: 3 End: 4089 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 9 | 592 | 0 |
| QYVEGWDWICPIRDRNTGIWVEVSISITGPVNIMDPHLVSTFHDDFKRSYLHCTLQLENRSSWIADCTLKIQVSTELEGNICLVEHLQSYAITIPPQSDV EYTIPPLFFYKPNLWWPNGMGKQSLYNVEISVDVKGFGESDSWSHYFGFRKIESTIDDSTGGRIFKLNGEPIFIRGGNWILSDGLLRLTKKRYMTDIKFH ADMNFNMLRCWGGGLAERPDFYHFCDVYGLMVWQEFWITGDVDGRGIPVSNPNGPLDHDLFLLCARDTVKLLRNHASLALWVGGNEQVPPVDINKALKSD LKLHPMFASSQASDSQEKHLSEEATDPSKYLDGTRVYVQGSMWDGFANGKGDFTDGPYEIQYPESFFKDSFYKYGFNPEVGSVGVPVAETIRATMPPEGW SIPIFRKRIDGYIEEVPNPIWDYHKFIPYSKPGKVHDQIELYGHPKDLDDFCEKAQLVNYAQYRALLEGWTSFMWTKFTGVLIWKTQNPWTGLRGQFYDH LHDQTAGFYGCRCAAEPIHVQLNLASYFIEVVNTTADELADVAVEISVWDLDGTSPYYKVTEKIVIPPKKVKQIMEMKYPKMKD | |||
| Full Sequence |
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| Protein Sequence Length: 782 Download |
| QIGKDVATQY VEGWDWICPI RDRNTGIWVE VSISITGPVN IMDPHLVSTF HDDFKRSYLH 60 CTLQLENRSS WIADCTLKIQ VSTELEGNIC LVEHLQSYAI TIPPQSDVEY TIPPLFFYKP 120 NLWWPNGMGK QSLYNVEISV DVKGFGESDS WSHYFGFRKI ESTIDDSTGG RIFKLNGEPI 180 FIRGGNWILS DGLLRLTKKR YMTDIKFHAD MNFNMLRCWG GGLAERPDFY HFCDVYGLMV 240 WQEFWITGDV DGRGIPVSNP NGPLDHDLFL LCARDTVKLL RNHASLALWV GGNEQVPPVD 300 INKALKSDLK LHPMFASSQA SDSQEKHLSE EATDPSKYLD GTRVYVQGSM WDGFANGKGD 360 FTDGPYEIQY PESFFKDSFY KYGFNPEVGS VGVPVAETIR ATMPPEGWSI PIFRKRIDGY 420 IEEVPNPIWD YHKFIPYSKP GKVHDQIELY GHPKDLDDFC EKAQLVNYAQ YRALLEGWTS 480 FMWTKFTGVL IWKTQNPWTG LRGQFYDHLH DQTAGFYGCR CAAEPIHVQL NLASYFIEVV 540 NTTADELADV AVEISVWDLD GTSPYYKVTE KIVIPPKKVK QIMEMKYPKM KDAKPVYFLL 600 LKLFRLSDNR ILSRNFYWLH LPGKDYKLLE QYQQKKIPLK IYSEILVSGT KHQLRMIVEN 660 KSTKSVAESI HPASGIDLGD VSGSHSTGKE TTHDGNESGS LWRKIHSSLG VARTSDNLRT 720 LEVDGTDSGI AFFLHFSVHT SGSSTAEEKY NDTRILPVHY SDNYFSLAPG EQTSIDISFE 780 AA |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK09525 | lacZ | 0.007 | 156 | 294 | 159 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 4.0e-7 | 10 | 294 | 307 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 7.0e-12 | 41 | 158 | 118 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 2.0e-24 | 9 | 294 | 291 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 1 | 781 | 172 | 953 | glycosyl hydrolase [Gossypium hirsutum] |
| GenBank | EEC79162.1 | 0 | 1 | 781 | 186 | 962 | hypothetical protein OsI_19836 [Oryza sativa Indica Group] |
| RefSeq | NP_001055444.1 | 0 | 1 | 781 | 185 | 961 | Os05g0391500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002319539.1 | 0 | 1 | 781 | 171 | 951 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002439742.1 | 0 | 1 | 781 | 175 | 955 | hypothetical protein SORBIDRAFT_09g019350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 8.99999e-40 | 13 | 619 | 200 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 8.99999e-40 | 13 | 619 | 200 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 3e-39 | 13 | 619 | 200 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_A | 3e-39 | 13 | 619 | 200 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x05_B | 3e-39 | 13 | 619 | 200 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO871600 | 333 | 130 | 462 | 0 |
| ES793920 | 367 | 203 | 567 | 0 |
| GO847639 | 344 | 347 | 690 | 0 |
| GO848159 | 315 | 1 | 315 | 0 |
| CK208936 | 332 | 271 | 602 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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