| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00050878m |
| Family | CE8 |
| Protein Properties | Length: 565 Molecular Weight: 59013.5 Isoelectric Point: 7.722 |
| Chromosome | Chromosome/Scaffold: 069061 Start: 1662 End: 3536 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 249 | 546 | 0 |
| VTVDQSGAGNYTTVGDAVAAAPSNLAGSSGYFVIRVAAGVYEENVVVPKSKKYVMMIGDGIGQSVITGNRSVVDGWTTFNSATFAVLGTGFVAANMTFRN TAGPAKHQAVALRSGADLSTFYRCSFEAYQDTLYAHSLRQFYRACDIYGTVDYVFGNAAVVFQGCNLYSRLPMQGQSNTVTAQGRTDPNQSTGTTLQGCV VVAAPDLAANAAFPVATYLGRPWKPYSRTVIMQSELDAVVDPAGWMPWDGDFALATLFYAEYNNTGPGADSSRRVAWPGFHVLGSAADAGNFTVGNMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 565 Download |
| MAADIRATTV LPAILVLSLS LLFVGARSDT AAAAATPVTP STACNGTTDP SFCRTVLPSN 60 GTSNLYTYGR FSVARSLANA NRFLGLVNRY LARGGRGLSP GAVAALQDCQ LLSGLNIDFL 120 SAAGATLNTS ANSTLLDPQA EDVQALLSAI LTNQQTCADG LQAAAAAWSV RDGLAVPMAN 180 STKLYSVSLS LFTRAWVPAA GRRRSRGSSA GKPPHHGHGR ALFDATNDEM VRRMALEGAA 240 AAVPVVGEVT VDQSGAGNYT TVGDAVAAAP SNLAGSSGYF VIRVAAGVYE ENVVVPKSKK 300 YVMMIGDGIG QSVITGNRSV VDGWTTFNSA TFAVLGTGFV AANMTFRNTA GPAKHQAVAL 360 RSGADLSTFY RCSFEAYQDT LYAHSLRQFY RACDIYGTVD YVFGNAAVVF QGCNLYSRLP 420 MQGQSNTVTA QGRTDPNQST GTTLQGCVVV AAPDLAANAA FPVATYLGRP WKPYSRTVIM 480 QSELDAVVDP AGWMPWDGDF ALATLFYAEY NNTGPGADSS RRVAWPGFHV LGSAADAGNF 540 TVGNMVLGDF WLPQTGVPFT SGLN* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02301 | PLN02301 | 5.0e-139 | 104 | 563 | 460 | + pectinesterase/pectinesterase inhibitor |
| PLN02468 | PLN02468 | 3.0e-140 | 104 | 563 | 464 | + putative pectinesterase/pectinesterase inhibitor |
| pfam01095 | Pectinesterase | 4.0e-177 | 253 | 549 | 297 | + Pectinesterase. |
| PLN02713 | PLN02713 | 0 | 44 | 564 | 534 | + Probable pectinesterase/pectinesterase inhibitor |
| PLN03043 | PLN03043 | 0 | 44 | 563 | 545 | + Probable pectinesterase/pectinesterase inhibitor; Provisional |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY73715.1 | 0 | 41 | 564 | 38 | 519 | hypothetical protein OsI_01593 [Oryza sativa Indica Group] |
| GenBank | EAZ11620.1 | 0 | 41 | 564 | 38 | 531 | hypothetical protein OsJ_01484 [Oryza sativa Japonica Group] |
| GenBank | EEE63420.1 | 0 | 1 | 563 | 1 | 574 | hypothetical protein OsJ_18232 [Oryza sativa Japonica Group] |
| RefSeq | NP_001042865.1 | 0 | 41 | 564 | 38 | 557 | Os01g0311800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002457749.1 | 0 | 27 | 563 | 31 | 563 | hypothetical protein SORBIDRAFT_03g012820 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 249 | 563 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 245 | 563 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 2e-19 | 249 | 473 | 8 | 247 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 2e-19 | 249 | 473 | 8 | 247 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 2e-19 | 249 | 473 | 8 | 247 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
