Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00050881m |
Family | GH28 |
Protein Properties | Length: 412 Molecular Weight: 44129.9 Isoelectric Point: 8.1314 |
Chromosome | Chromosome/Scaffold: 072019 Start: 2696 End: 4606 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 385 | 0 |
GGTLLYVPPGVWLTGPFNLTSHMTLFLARGAVIRATQDTSSWPLVDPLPSYGRGRELPGGRYMSLIHGNGLQDVFITGENGTIDGQGSVWWDMWKKRTLP FTRPHLLELMYSTDVIVSNVVFQDSPFWNIHPVYCSNVVIANVTVLAPHDSPNTDGVDLDSSNNVCIEDSYISTGDDLISIKSGWDEYGIAFARPSSGIT IRRITGSGPFAGFAVGSETSGGVENVFVEHLNFFSMGVGIHIKTNSGRGGYIRNITVSEVTLNGARYGLRIAGDVGGHPDTSYNPNVLPVVDSVTIKNVW GQNIRQAGLIRGIRSSVFSRICLSNVKLYGSASIGAWKCRDV |
Full Sequence |
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Protein Sequence Length: 412 Download |
PAPPRRGAWM SVAGFGAVGD GRTLNTAAFA RAVARIERRR GARGGTLLYV PPGVWLTGPF 60 NLTSHMTLFL ARGAVIRATQ DTSSWPLVDP LPSYGRGREL PGGRYMSLIH GNGLQDVFIT 120 GENGTIDGQG SVWWDMWKKR TLPFTRPHLL ELMYSTDVIV SNVVFQDSPF WNIHPVYCSN 180 VVIANVTVLA PHDSPNTDGV DLDSSNNVCI EDSYISTGDD LISIKSGWDE YGIAFARPSS 240 GITIRRITGS GPFAGFAVGS ETSGGVENVF VEHLNFFSMG VGIHIKTNSG RGGYIRNITV 300 SEVTLNGARY GLRIAGDVGG HPDTSYNPNV LPVVDSVTIK NVWGQNIRQA GLIRGIRSSV 360 FSRICLSNVK LYGSASIGAW KCRDVSGGAL DVQPSPCTEL ASTSETGFCT T* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-23 | 10 | 317 | 324 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 4.0e-25 | 123 | 305 | 187 | + polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-27 | 123 | 402 | 292 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-33 | 116 | 389 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-51 | 10 | 352 | 386 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT44156.1 | 0 | 4 | 410 | 42 | 473 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EAY99223.1 | 0 | 4 | 410 | 42 | 447 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
RefSeq | NP_001056466.1 | 0 | 4 | 410 | 42 | 447 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149385.1 | 0 | 4 | 410 | 38 | 446 | LOC100283011 [Zea mays] |
RefSeq | XP_002441600.1 | 0 | 4 | 411 | 32 | 439 | hypothetical protein SORBIDRAFT_09g030140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-39 | 1 | 375 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-39 | 1 | 375 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-39 | 1 | 375 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-39 | 1 | 375 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-17 | 26 | 386 | 26 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG891099 | 278 | 110 | 387 | 0 |
GO864447 | 296 | 115 | 410 | 0 |
JG866877 | 248 | 165 | 412 | 0 |
EG383332 | 277 | 83 | 359 | 0 |
JG866877 | 33 | 138 | 170 | 0.012 |
Sequence Alignments (This image is cropped. Click for full image.) |
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