y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00050930m |
Family | CE8 |
Protein Properties | Length: 243 Molecular Weight: 26107.6 Isoelectric Point: 6.2124 |
Chromosome | Chromosome/Scaffold: 0230329 Start: 1058 End: 1998 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 94 | 243 | 0 |
CVDLNGCCDFTTVQAAVNAVPNHSRKRNVVWINKGIYFEKVTVPASKPNITFQGQGFDITAIAWNDTAKSANGTFYSASVSVFASGFVAKNISFINVAPI PRPGAVDAQAVAIRISGDQAAFWGCGFFGAQDTLHDDRGRHYFKECFIQG |
Full Sequence |
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Protein Sequence Length: 243 Download |
MISQINGGAA AAVVAAFLVF SAHLYFPTTA HLYCPATPLL QGLSDLTEPS FPFCPLTGTS 60 TCTDHQYGCK YNPLCDDFPP DFPPPDTPAL TVFCVDLNGC CDFTTVQAAV NAVPNHSRKR 120 NVVWINKGIY FEKVTVPASK PNITFQGQGF DITAIAWNDT AKSANGTFYS ASVSVFASGF 180 VAKNISFINV APIPRPGAVD AQAVAIRISG DQAAFWGCGF FGAQDTLHDD RGRHYFKECF 240 IQG 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 1.0e-31 | 92 | 243 | 160 | + pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-43 | 95 | 243 | 149 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-50 | 87 | 243 | 164 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 8.0e-51 | 92 | 243 | 158 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-105 | 27 | 243 | 227 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 74 | 243 | 71 | 240 | Pectinesterase [Medicago truncatula] |
GenBank | EEC83093.1 | 0 | 14 | 243 | 13 | 237 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 30 | 243 | 146 | 362 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | NP_172023.1 | 0 | 74 | 243 | 72 | 241 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002445213.1 | 0 | 1 | 243 | 3 | 242 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-25 | 94 | 243 | 10 | 154 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-17 | 94 | 243 | 6 | 150 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000005 | 102 | 243 | 43 | 199 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000003 | 103 | 243 | 18 | 172 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000003 | 103 | 243 | 18 | 172 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |