| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00051048m |
| Family | GH35 |
| Protein Properties | Length: 626 Molecular Weight: 68595.5 Isoelectric Point: 5.597 |
| Chromosome | Chromosome/Scaffold: 023285 Start: 460 End: 8440 |
| Description | beta galactosidase 9 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 2 | 80 | 1e-29 |
| ADWGEPLPHRPAQDSAFAVARFYQRGGSLQNYYMYFGGTNFERTAGGPRQITSYDYDAPIDEYGILRQPKWGHLKDLHA | |||
| Full Sequence |
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| Protein Sequence Length: 626 Download |
| YADWGEPLPH RPAQDSAFAV ARFYQRGGSL QNYYMYFGGT NFERTAGGPR QITSYDYDAP 60 IDEYGILRQP KWGHLKDLHA AIKLCEPALI AVDGSPQYVK LGPMQEAHVY SSGKIHTNGS 120 ISENGQICSA FLANIDEHKY VSVWIFGKSY SLPPWSVSIL PDCENVAFNT ARVGTQTSVF 180 TVESGSPSYS SRHKPRTLSL IGGPYLSSTW WTSKEPIGKW GXGSFAAQGI LEHLNVTKDI 240 SDYLSYTMSV NISDEDVTYW NSKGVLPSLT IDQIRDVARV FVNGKLAGSK VGHWVSLNQP 300 VQLVQGPNEL TLFSEIVGLQ NYGAFLEKDG AGFRGQVKLT GLSNGDIDFT NSLWTYQIGL 360 KGEFSRIYSP ENQGYAKWSS MQNDDTQTPF TWFKTMFDAP EGNDPVAIGL GSMGKGQAWV 420 NGRLIGRYWS IVAPESGCPS SCNYAGTYGD SKCRSNCGMA TQSWYHIPRE WLQESGNLLV 480 LLEETGGDPS QISLQVHYTK TICSKISETY YPPLSSWSRA SNSRATLNTV APELHLQCDE 540 GHVISKIIFA SYGTPSGGCQ NFSVGNCHAS TTLDLVTEAC VGNNKCSISV TNDVFGDPCR 600 KVVKDLAVEA ECSPPLATEE PRDDM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02140 | Gal_Lectin | 2.0e-26 | 536 | 612 | 80 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 1.0e-32 | 4 | 82 | 82 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 4.0e-180 | 1 | 613 | 620 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAE72075.1 | 0 | 1 | 612 | 267 | 883 | pear beta-galactosidase3 [Pyrus communis] |
| DDBJ | BAF31232.1 | 0 | 1 | 612 | 262 | 878 | beta-D-galactosidase [Persea americana] |
| RefSeq | NP_001066673.1 | 0 | 1 | 625 | 295 | 919 | Os12g0429200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002328900.1 | 0 | 1 | 612 | 267 | 880 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002442888.1 | 0 | 1 | 625 | 300 | 923 | hypothetical protein SORBIDRAFT_08g004410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 0.0002 | 244 | 431 | 385 | 548 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 0.001 | 4 | 78 | 254 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 0.001 | 4 | 78 | 254 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG860970 | 277 | 261 | 537 | 0 |
| GT038380 | 338 | 285 | 622 | 0 |
| JG877136 | 273 | 230 | 502 | 0 |
| GT047081 | 346 | 281 | 626 | 0 |
| JG907874 | 297 | 218 | 514 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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