| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00051097m |
| Family | AA1 |
| Protein Properties | Length: 393 Molecular Weight: 41831.4 Isoelectric Point: 6.167 |
| Chromosome | Chromosome/Scaffold: 0231284 Start: 131 End: 1309 |
| Description | laccase 12 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 5 | 378 | 0 |
| DVVRTATRTGAAPNISDALTVNGQPGDLYKCSSKDTTVFPVRSGETNLLRFINAALNMELFVSLAGHTMTVVGADASYTKPHTTLVLMIAPGQTTDVLVT FDQPPARYYLAARAYASAQGVPFDNTTTTAIFDYGGSSRPAMPTLPAYNDTATATAFTTSLRGLRKAELPSRVDENLFFTVGVGLLNCSSGQSCGGPNNT RFAASINNVSFVLPSTLSILQAHYHGGAGAGVFTADFPGKPPVQFDYTAQNVSRALWQPVRGTKVYRLRYGAAVQVVLQGTNILAAENHPIHLHGYDFYI LGEGLGNFDAAADTAKLNLEDPPMRNTVGVPANGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEDGVGE | |||
| Full Sequence |
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| Protein Sequence Length: 393 Download |
| MNPVDVVRTA TRTGAAPNIS DALTVNGQPG DLYKCSSKDT TVFPVRSGET NLLRFINAAL 60 NMELFVSLAG HTMTVVGADA SYTKPHTTLV LMIAPGQTTD VLVTFDQPPA RYYLAARAYA 120 SAQGVPFDNT TTTAIFDYGG SSRPAMPTLP AYNDTATATA FTTSLRGLRK AELPSRVDEN 180 LFFTVGVGLL NCSSGQSCGG PNNTRFAASI NNVSFVLPST LSILQAHYHG GAGAGVFTAD 240 FPGKPPVQFD YTAQNVSRAL WQPVRGTKVY RLRYGAAVQV VLQGTNILAA ENHPIHLHGY 300 DFYILGEGLG NFDAAADTAK LNLEDPPMRN TVGVPANGWA VIRFVADNPG VWLMHCHLDV 360 HITWGLAMAF LVEDGVGELQ SLEAPPPDLP LC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02191 | PLN02191 | 3.0e-36 | 42 | 370 | 336 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 2.0e-43 | 34 | 381 | 366 | + oxidoreductase | ||
| pfam07731 | Cu-oxidase_2 | 9.0e-44 | 240 | 376 | 141 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| TIGR03388 | ascorbase | 7.0e-55 | 42 | 376 | 354 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03389 | laccase | 0 | 2 | 392 | 398 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF27393.2 | 0 | 1 | 392 | 125 | 522 | Os11g0108700 [Oryza sativa Japonica Group] |
| RefSeq | NP_001044679.1 | 0 | 2 | 392 | 171 | 567 | Os01g0827300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001065548.1 | 0 | 1 | 392 | 170 | 567 | Os11g0108700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001065948.1 | 0 | 1 | 392 | 170 | 567 | Os12g0108000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002448873.1 | 0 | 1 | 392 | 188 | 587 | hypothetical protein SORBIDRAFT_05g000680 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 4e-38 | 18 | 370 | 181 | 521 | A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q) From Cichorium Intybus In Complex With 1-Kestose |
| PDB | 1asq_A | 4e-38 | 18 | 370 | 181 | 521 | A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q) From Cichorium Intybus In Complex With 1-Kestose |
| PDB | 1asp_B | 4e-38 | 18 | 370 | 181 | 521 | A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q) From Cichorium Intybus In Complex With 1-Kestose |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CT852116 | 395 | 5 | 378 | 0 |
| DY297248 | 345 | 40 | 371 | 0 |
| FE523320 | 303 | 90 | 384 | 0 |
| FF359832 | 258 | 137 | 393 | 0 |
| EX381405 | 290 | 92 | 375 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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