| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00051129m |
| Family | GH51 |
| Protein Properties | Length: 667 Molecular Weight: 73104.8 Isoelectric Point: 5.3919 |
| Chromosome | Chromosome/Scaffold: 023070 Start: 1644 End: 8371 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH51 | 175 | 650 | 0 |
| SQNLASVAIMVAGKSKWIKVEQKMVAEGTNRTSRLQITSKKKGVVWFDQVSLMPADTYKGHGFRDELVSMLLDLKPQFLRFPGGCFVQGGWLRNAFRWRE SIGPWEERPGHFGDCWNYWTDDGLGYFEFLQLSEDLGAAPIWVFNSGLSYNDEVDTAAIAPFVKDVLDSLEFARGSANSSWGSVRAAMGHPEPFPVKYAA IGNEDCGKKFYNGNYLKFYNAIREAYPDIQLISNCDGSSGPLDHPADLYDFHVYADAKTLFSMKNTFDKTSRSGPKAFVSEYAVWKTDAGRGTLLASLAE AAFLTGLEKNSDVVEMACHAPLFVNDDIEKKWNPDVIVFNTWQHYGTPSYWMQVLFRESSGAIVHPTTISSSSSGNSSLAASAITWQDSDNSSFLRVKII NFESVAVQITISTTGLQASIDVLRSTATVLTSSNVMDENSFSNQDKVSPVKSQLFDAGAHMQVTLAPHSFTSFDLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 667 Download |
| MGSMEGLSRT VIHFLLLFCI VCKCLASDLE ANQKATLKID ASQKLARKIP DTLLGVFFEE 60 MGRGGAGGLW AELVSNRGFE AGGPNTPSNI EPWLIIGNES SIFVETDRTS CFSRNIVALR 120 MEVLCNNCPA GGVGIYNPGF WGMNIEDGKT YNLVMYVKSA ETVPLTVSLT SSDGSQNLAS 180 VAIMVAGKSK WIKVEQKMVA EGTNRTSRLQ ITSKKKGVVW FDQVSLMPAD TYKGHGFRDE 240 LVSMLLDLKP QFLRFPGGCF VQGGWLRNAF RWRESIGPWE ERPGHFGDCW NYWTDDGLGY 300 FEFLQLSEDL GAAPIWVFNS GLSYNDEVDT AAIAPFVKDV LDSLEFARGS ANSSWGSVRA 360 AMGHPEPFPV KYAAIGNEDC GKKFYNGNYL KFYNAIREAY PDIQLISNCD GSSGPLDHPA 420 DLYDFHVYAD AKTLFSMKNT FDKTSRSGPK AFVSEYAVWK TDAGRGTLLA SLAEAAFLTG 480 LEKNSDVVEM ACHAPLFVND DIEKKWNPDV IVFNTWQHYG TPSYWMQVLF RESSGAIVHP 540 TTISSSSSGN SSLAASAITW QDSDNSSFLR VKIINFESVA VQITISTTGL QASIDVLRST 600 ATVLTSSNVM DENSFSNQDK VSPVKSQLFD AGAHMQVTLA PHSFTSFDLA LAPSKLVTLA 660 GRVNKY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 5.0e-29 | 236 | 643 | 480 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 9.0e-39 | 454 | 643 | 202 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 4.0e-50 | 454 | 643 | 199 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK21880.1 | 0 | 1 | 657 | 1 | 653 | AF320325_1 arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II [Hordeum vulgare] |
| GenBank | ACN33779.1 | 0 | 11 | 657 | 35 | 677 | unknown [Zea mays] |
| RefSeq | NP_001065660.1 | 0 | 1 | 657 | 1 | 655 | Os11g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148977.1 | 0 | 11 | 657 | 35 | 677 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 1 | 657 | 1 | 653 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 6e-18 | 236 | 651 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 6e-18 | 236 | 651 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 6e-18 | 236 | 651 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 6e-18 | 236 | 651 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 6e-18 | 236 | 651 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
