| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00051498m |
| Family | PL4 |
| Protein Properties | Length: 681 Molecular Weight: 74097 Isoelectric Point: 5.938 |
| Chromosome | Chromosome/Scaffold: 023615 Start: 4018 End: 7719 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 40 | 661 | 0 |
| ADDPTQVVVDNGVVQVSLSRPQGQITGVRYGGGGGQNLLQYDASQRNSGGYSDVVWNYPGSNRPGTMDMLDGTEFQVVSSSEEQVELSFRSSYNASRPDS LRLNVDKRLVMLRGSSGFYCYSIFEHAPEYPALNVSVARLAFKLNAAMFNYMAISDDIQRYMPSAADRDPPRGVPLAYKEAVLLVDPVEPEFRGEVDDKY QYSLDNQDNSVHGWIGGSGDPAASASATGFWVVTPSIEFKNGGPLKRELTSHTGPTSLAVFLGPHYVGRDMVIRFEEGESWKKVLGPVFIYLNSGDPSRK RDLWEDAKARARAEVSRWPYTFPGSPDFAKPCERGSVTGRLWVRDAAAKQQQQPAAMAYVGLAAPGQPGSWARESKRYQFWTRATSDGRFSIGNVREGVY SLYAWVPGVLGDYVHASSVTVTPASAVDAGDLVFEPPRSGPTLWEIGVPDQSAAEFHVPDPDPRYASRLFLDRGTYRQYGLWERYAALYPDGDLVFTVGE SNHSRDWFFAHVTRMVAPGKNNTVVPTTWQIRFHLDEVVAGGTYTLRVALAASHMASLQVRVNGGGDSGAGGAGAPPALLMGDNNAIARHGIRGTEWNLD FRIEGRLLNQGDNTIHITQASA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 681 Download |
| MAAAPRWCLQ LAVGASLLVL LLAADPPPPP AAGGGVTLHA DDPTQVVVDN GVVQVSLSRP 60 QGQITGVRYG GGGGQNLLQY DASQRNSGGY SDVVWNYPGS NRPGTMDMLD GTEFQVVSSS 120 EEQVELSFRS SYNASRPDSL RLNVDKRLVM LRGSSGFYCY SIFEHAPEYP ALNVSVARLA 180 FKLNAAMFNY MAISDDIQRY MPSAADRDPP RGVPLAYKEA VLLVDPVEPE FRGEVDDKYQ 240 YSLDNQDNSV HGWIGGSGDP AASASATGFW VVTPSIEFKN GGPLKRELTS HTGPTSLAVF 300 LGPHYVGRDM VIRFEEGESW KKVLGPVFIY LNSGDPSRKR DLWEDAKARA RAEVSRWPYT 360 FPGSPDFAKP CERGSVTGRL WVRDAAAKQQ QQPAAMAYVG LAAPGQPGSW ARESKRYQFW 420 TRATSDGRFS IGNVREGVYS LYAWVPGVLG DYVHASSVTV TPASAVDAGD LVFEPPRSGP 480 TLWEIGVPDQ SAAEFHVPDP DPRYASRLFL DRGTYRQYGL WERYAALYPD GDLVFTVGES 540 NHSRDWFFAH VTRMVAPGKN NTVVPTTWQI RFHLDEVVAG GTYTLRVALA ASHMASLQVR 600 VNGGGDSGAG GAGAPPALLM GDNNAIARHG IRGTEWNLDF RIEGRLLNQG DNTIHITQAS 660 ALNQFVGVMY DYIRLEGPSM * 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 6.0e-24 | 372 | 471 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 9.0e-45 | 483 | 676 | 195 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 4.0e-50 | 76 | 335 | 264 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-62 | 76 | 235 | 160 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 29 | 679 | 41 | 690 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 29 | 680 | 41 | 691 | Os12g0131900 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066077.1 | 0 | 29 | 679 | 41 | 677 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441644.1 | 0 | 2 | 679 | 3 | 721 | hypothetical protein SORBIDRAFT_09g030850 [Sorghum bicolor] |
| RefSeq | XP_002441731.1 | 0 | 23 | 678 | 51 | 712 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
