Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00051839m |
Family | CE8 |
Protein Properties | Length: 270 Molecular Weight: 29323.2 Isoelectric Point: 8.83 |
Chromosome | Chromosome/Scaffold: 0236020 Start: 2 End: 1938 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 21 | 263 | 0 |
VDRTPGAGDFTSIQTAVDSLPLINLARVVIKVNAGTYTEKVSISPMRAFITVEGAGADRTVVQWGDTAETVGSLGRPMGTFGSATFAVNSMFFVAKNITF KNTAPVPRPGALGKQGVALRISADNAAFVGCNFLGAQDTLYDHLGRHYYRDCYIEGSVDFIFGNALSLYEGCHVHAIARNYGALTAQSRQSLLEDTGFSF VNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWG |
Full Sequence |
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Protein Sequence Length: 270 Download |
GHSSYNRALN RALLPTRTLV VDRTPGAGDF TSIQTAVDSL PLINLARVVI KVNAGTYTEK 60 VSISPMRAFI TVEGAGADRT VVQWGDTAET VGSLGRPMGT FGSATFAVNS MFFVAKNITF 120 KNTAPVPRPG ALGKQGVALR ISADNAAFVG CNFLGAQDTL YDHLGRHYYR DCYIEGSVDF 180 IFGNALSLYE GCHVHAIARN YGALTAQSRQ SLLEDTGFSF VNCRVTGSGA LYLGRAWGTF 240 SRVVFAYTYM DNIIIPRGWY NWGDPTREMS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 5.0e-87 | 13 | 270 | 265 | + pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-89 | 23 | 268 | 248 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-94 | 16 | 270 | 263 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-97 | 17 | 262 | 246 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 0 | 2 | 270 | 269 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD87905.1 | 0 | 2 | 269 | 69 | 336 | pectinesterase-like [Oryza sativa Japonica Group] |
GenBank | EEC79546.1 | 0 | 2 | 270 | 83 | 351 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
RefSeq | NP_001044216.1 | 0 | 2 | 270 | 69 | 337 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001056077.1 | 0 | 2 | 270 | 83 | 351 | Os05g0521600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002440102.1 | 0 | 1 | 270 | 90 | 359 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.99994e-41 | 20 | 262 | 9 | 252 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-36 | 26 | 262 | 11 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-27 | 20 | 259 | 34 | 303 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 3e-17 | 16 | 259 | 3 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-17 | 16 | 259 | 3 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE105585 | 237 | 34 | 270 | 0 |
DT759916 | 224 | 47 | 270 | 0 |
ES913245 | 262 | 2 | 263 | 0 |
EH701256 | 235 | 36 | 270 | 0 |
CN126747 | 193 | 78 | 270 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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