Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052008m |
Family | GH28 |
Protein Properties | Length: 461 Molecular Weight: 47951.9 Isoelectric Point: 7.5718 |
Chromosome | Chromosome/Scaffold: 011012 Start: 1422 End: 3862 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 94 | 438 | 0 |
AQACSSAQPAAVLVPAGKRYLLKETKLSGPCKSPRVTFRLEGTLVAPADKSGWPNPGHPRWVSFTGVDGLTVTGEGAMDGRGESSWRTSCRTNHSLPCTF APAALTLASCSDVEVEGITLRNAPQIHVLVERCRGVTLSGLTIASPGDSPENDGIHVGRSDGVRILGARIKTGDDCLSVATGTANLYAAGIECGPGHGIS IGSLGRGGSRAEVSNVTVDGARVSGTLFGARIKTWRGGSGYARGIRFLNMDMDRVRNPIVIDQSYCTTTDPSRPSACDHQLSESSAVEVSDVVFGNITGT TVTRDAIRLHCSEAVPCRDVVLRDVHLRTRKRGEKNAATSSCENV |
Full Sequence |
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Protein Sequence Length: 461 Download |
MASRTLLATA CCLVVLLLLT LGGALVEAHS APWVPHRKAA PRRSLSTTAN APESGTADGN 60 ATENNATTTF DVGSFGAAGD GKTDDTAAFQ NAWAQACSSA QPAAVLVPAG KRYLLKETKL 120 SGPCKSPRVT FRLEGTLVAP ADKSGWPNPG HPRWVSFTGV DGLTVTGEGA MDGRGESSWR 180 TSCRTNHSLP CTFAPAALTL ASCSDVEVEG ITLRNAPQIH VLVERCRGVT LSGLTIASPG 240 DSPENDGIHV GRSDGVRILG ARIKTGDDCL SVATGTANLY AAGIECGPGH GISIGSLGRG 300 GSRAEVSNVT VDGARVSGTL FGARIKTWRG GSGYARGIRF LNMDMDRVRN PIVIDQSYCT 360 TTDPSRPSAC DHQLSESSAV EVSDVVFGNI TGTTVTRDAI RLHCSEAVPC RDVVLRDVHL 420 RTRKRGEKNA ATSSCENVLL AESTNVSPVP CSSANSPNEL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-72 | 89 | 438 | 353 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-73 | 54 | 451 | 400 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-79 | 97 | 453 | 357 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-86 | 66 | 448 | 385 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-87 | 70 | 455 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 70 | 443 | 53 | 415 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 59 | 453 | 42 | 425 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 59 | 453 | 42 | 425 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | NP_001140231.1 | 0 | 70 | 453 | 64 | 440 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | XP_002466242.1 | 0 | 70 | 455 | 75 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-21 | 103 | 438 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-21 | 103 | 438 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-21 | 103 | 438 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-21 | 103 | 438 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-21 | 103 | 438 | 24 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |