| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00052192m |
| Family | GT41 |
| Protein Properties | Length: 912 Molecular Weight: 101102 Isoelectric Point: 5.8413 |
| Chromosome | Chromosome/Scaffold: 011550 Start: 4804 End: 11407 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT41 | 349 | 857 | 0 |
| IKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGSITLAIQAYERCLQIDPDSRNACQNRLLAMNYIDEGSDDKLYEAHR EWGKRFMKLYPQHTSWDNSKIADRPLIIGYVSPDYFTHSVSYFIEAPLTHHDYTNCKVVVYSGVVKADAKTLRFKDKVLKKGGLWRDIYGIDEKKVASLV REDKVDILVELTGHTANNKLGTLACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPSTKQKHVEELVRLPESFLCYTPSPEAGPVCPTPAISNGFITF GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQKFLSTLEELGLESLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGAVHAHNVGVSLLSKVGLGRLVAKTEDEYVSLALDLASDVNALQELRMSLRELMMKSPFCDGERFTRSLEAAYRNMWHRYCDGDVPSLRRLEL LQEHPIVNK | |||
| Full Sequence |
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| Protein Sequence Length: 912 Download |
| MGQPGMDSVQ GKESNGVAPD RNGGASPAKQ QLEGKEALRY ANILRSRNKF ADAIQLYNTV 60 LEKEGANVEA LIGKGICLQA QSLPRQAIEC FTEAVKIEPQ NACALTHCGM IYKDEGHLVE 120 AAEAYQKART ADPSYKPASE FLAIVLTDLG TSLKLAGNTE EGIQKYCEAL EVDNHYAPAY 180 YNLGVVYSEM MQFDTALTCY EKAALERPLY AEAYCNMGVI YKNRGELEAA IACYERCLTI 240 SPNFEIAKNN MAIALTDLGT KVKIEGDIIQ GVTYYKKALF YNWHYADAMY NLGVAYGEML 300 NFEMAIVFYE LALHFNPRCA EACNNLGVIY KDRDNLDKAV ECYQMALSIK PNFSQSLNNL 360 GVVYTVQGKM DAAASMIEKA IIANPTYAEA YNNLGVLYRD AGSITLAIQA YERCLQIDPD 420 SRNACQNRLL AMNYIDEGSD DKLYEAHREW GKRFMKLYPQ HTSWDNSKIA DRPLIIGYVS 480 PDYFTHSVSY FIEAPLTHHD YTNCKVVVYS GVVKADAKTL RFKDKVLKKG GLWRDIYGID 540 EKKVASLVRE DKVDILVELT GHTANNKLGT LACRPAPIQV TWIGYPNTTG LPTIDYRITD 600 SLADPPSTKQ KHVEELVRLP ESFLCYTPSP EAGPVCPTPA ISNGFITFGS FNNLAKITPK 660 VLQVWARILC AVPNSRLVVK CKPFCCDSIR QKFLSTLEEL GLESLRVDLL PLIHLNHDHM 720 QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGAVHA HNVGVSLLSK VGLGRLVAKT 780 EDEYVSLALD LASDVNALQE LRMSLRELMM KSPFCDGERF TRSLEAAYRN MWHRYCDGDV 840 PSLRRLELLQ EHPIVNKQDS DKTAEKLADL KAQKENAAVE EDKQPPIMAN GASSPGSPAS 900 AKCEANGHCS Q* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00189 | TPR | 2.0e-18 | 145 | 243 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| cd00189 | TPR | 3.0e-21 | 321 | 420 | 100 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
| COG3914 | Spy | 3.0e-91 | 305 | 835 | 552 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84033.1 | 0 | 6 | 911 | 1 | 947 | hypothetical protein OsI_30264 [Oryza sativa Indica Group] |
| GenBank | EEE69149.1 | 0 | 6 | 911 | 1 | 947 | hypothetical protein OsJ_28275 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062501.1 | 0 | 1 | 911 | 1 | 927 | Os08g0559300 [Oryza sativa (japonica cultivar-group)] |
| Swiss-Prot | O82422 | 0 | 6 | 911 | 1 | 944 | SPY_HORVU RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=HvSPY |
| RefSeq | XP_002445679.1 | 0 | 1 | 908 | 1 | 908 | hypothetical protein SORBIDRAFT_07g024110 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 1e-36 | 208 | 624 | 6 | 386 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 4gz6_D | 3e-23 | 646 | 841 | 524 | 715 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 4gz6_D | 3e-16 | 99 | 255 | 6 | 155 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 4gz6_D | 0.00000000000005 | 146 | 293 | 12 | 152 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 4gz6_D | 0.000000002 | 176 | 327 | 8 | 152 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO867600 | 327 | 307 | 633 | 0 |
| GT041789 | 337 | 331 | 667 | 0 |
| GO867600 | 119 | 148 | 264 | 0.0000000000005 |
| GO867600 | 147 | 200 | 344 | 0.000000000001 |
| GO867600 | 126 | 43 | 166 | 0.32 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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