Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052282m |
Family | CE8 |
Protein Properties | Length: 324 Molecular Weight: 36025.9 Isoelectric Point: 8.2978 |
Chromosome | Chromosome/Scaffold: 011017 Start: 3262 End: 5653 |
Description | pectin methylesterase 31 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 19 | 303 | 0 |
REAFPTVQAAVDAVPLGNRARVVIRLAPGVYREPVYVAKTRNFITVAGAAGPEATVISWDNTATRIKHSQSSRVIGTGTFGCGTFIVEGEDFIAENITFE NSAPQGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRNCYIEGHCDFIFGNSVALMEHCHIHCKAAGYITAHSRKSTSETTGYVFLRCIITGN GEAGYMFLGRPWGPFGRVVFAHTFMDRCIKPSGWHNWDKSENERTACFYEYRCSGPGSRSSNRVAWCRQLLDVEAEHFLSHTFID |
Full Sequence |
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Protein Sequence Length: 324 Download |
MAQQSRRVLQ VAPPGKGDRE AFPTVQAAVD AVPLGNRARV VIRLAPGVYR EPVYVAKTRN 60 FITVAGAAGP EATVISWDNT ATRIKHSQSS RVIGTGTFGC GTFIVEGEDF IAENITFENS 120 APQGSGQAVA VRVTADRCAF YNCRFLGWQD TLYLHYGKQY LRNCYIEGHC DFIFGNSVAL 180 MEHCHIHCKA AGYITAHSRK STSETTGYVF LRCIITGNGE AGYMFLGRPW GPFGRVVFAH 240 TFMDRCIKPS GWHNWDKSEN ERTACFYEYR CSGPGSRSSN RVAWCRQLLD VEAEHFLSHT 300 FIDPDLDRPW LLQMMSTRIP ASA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 6.0e-80 | 11 | 305 | 311 | + Pectinesterase. | ||
PLN02665 | PLN02665 | 1.0e-88 | 2 | 312 | 319 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-89 | 8 | 303 | 298 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-102 | 14 | 303 | 297 | + pectinesterase family protein | ||
PLN02773 | PLN02773 | 0 | 3 | 323 | 321 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY78435.1 | 0 | 3 | 323 | 4 | 336 | hypothetical protein OsI_33526 [Oryza sativa Indica Group] |
RefSeq | NP_001064567.1 | 0 | 3 | 323 | 4 | 336 | Os10g0407000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151351.1 | 0 | 1 | 323 | 1 | 324 | pectinesterase-1 [Zea mays] |
RefSeq | XP_002283941.1 | 0 | 7 | 323 | 4 | 316 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002464636.1 | 0 | 1 | 323 | 57 | 381 | hypothetical protein SORBIDRAFT_01g022290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 11 | 302 | 11 | 302 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.00054e-42 | 11 | 284 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-24 | 2 | 305 | 28 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 8e-23 | 11 | 296 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 8e-23 | 11 | 296 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV024939 | 257 | 1 | 255 | 0 |
GD021882 | 227 | 90 | 316 | 0 |
DR793150 | 248 | 1 | 246 | 0 |
GR994392 | 312 | 2 | 313 | 0 |
HO303328 | 227 | 83 | 309 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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