Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052352m |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 50462.8 Isoelectric Point: 4.5262 |
Chromosome | Chromosome/Scaffold: 010995 Start: 2289 End: 4331 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 99 | 424 | 0 |
RAACASDSAVLLVPSDGTFTITTTTFSGLCKPGLVFQVDGVLMPPDGPDCWPPSDNRWQWVVFSNLDGMTLRVAGTIEGNGEDWWDLPCKPHRGPNGSTL RGQCDSPTLLRFFMSRNLVVEGLRVENSPEFHFRFDGCSDVHVDGLYISLPANSPNTDGIHIHVENTERVGIYNSRISNGDDCISIGTGSYDVDIQNITC GPGHGISIGSLGVHNSQACVANVTVRNAVIRNSDNGLRIKTWQGGMGAVSGIAFDTVAMENVRNCIIVDQDYCLDKRCMNQSTAVHVTDVSYANVRGSYD ARSAPIHFACSDTVPCTNITMSDVEL |
Full Sequence |
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Protein Sequence Length: 473 Download |
MGIAIRLLCL PLMAVAFCGY GPPRGVGRHK GGSKEGSVVS SPAVPPVDDG TRPVAPQPPT 60 GTVPSDPATP VQPAELCVFD VRAYGAVGDG TTDDTQAWRA ACASDSAVLL VPSDGTFTIT 120 TTTFSGLCKP GLVFQVDGVL MPPDGPDCWP PSDNRWQWVV FSNLDGMTLR VAGTIEGNGE 180 DWWDLPCKPH RGPNGSTLRG QCDSPTLLRF FMSRNLVVEG LRVENSPEFH FRFDGCSDVH 240 VDGLYISLPA NSPNTDGIHI HVENTERVGI YNSRISNGDD CISIGTGSYD VDIQNITCGP 300 GHGISIGSLG VHNSQACVAN VTVRNAVIRN SDNGLRIKTW QGGMGAVSGI AFDTVAMENV 360 RNCIIVDQDY CLDKRCMNQS TAVHVTDVSY ANVRGSYDAR SAPIHFACSD TVPCTNITMS 420 DVELLPFSGE LVDDPFCWSA YGMQQTPTIP PITCLQDGLP EALLDNPDLK CR* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 5.0e-66 | 79 | 456 | 390 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-73 | 64 | 430 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 102 | 424 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-88 | 60 | 424 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-103 | 63 | 457 | 407 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS98503.1 | 0 | 37 | 472 | 55 | 504 | unknown protein [Oryza sativa Japonica Group] |
EMBL | CBI25976.1 | 0 | 96 | 471 | 2 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001055086.1 | 0 | 37 | 472 | 55 | 485 | Os05g0279900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002263668.1 | 0 | 74 | 471 | 78 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519290.1 | 0 | 5 | 465 | 4 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-23 | 167 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-23 | 167 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-23 | 167 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-23 | 167 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-23 | 167 | 424 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |