| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00052474m |
| Family | GH17 |
| Protein Properties | Length: 202 Molecular Weight: 21552.3 Isoelectric Point: 5.8853 |
| Chromosome | Chromosome/Scaffold: 010865 Start: 590 End: 1735 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 1 | 201 | 0 |
| MENVHAVLAAAGLGHIKVTTSVSQAILGVYSPPSAAEFTGEAQGFMGPVLGFLARTGSPLMANIYPYLAWAYNPSAMDMSYALFTAPGTVVQDGAYGYQN LFDTTVDAFYVAMGRHGGAGVPLVVSESGWPSGGGQAATPANARVYNQYLINHVRQGTPRHPGGIETYLFSMFNENQKESGVEQNWGLFYPNMQHVYPIS F | |||
| Full Sequence |
|---|
| Protein Sequence Length: 202 Download |
| MENVHAVLAA AGLGHIKVTT SVSQAILGVY SPPSAAEFTG EAQGFMGPVL GFLARTGSPL 60 MANIYPYLAW AYNPSAMDMS YALFTAPGTV VQDGAYGYQN LFDTTVDAFY VAMGRHGGAG 120 VPLVVSESGW PSGGGQAATP ANARVYNQYL INHVRQGTPR HPGGIETYLF SMFNENQKES 180 GVEQNWGLFY PNMQHVYPIS F* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG5309 | COG5309 | 1.0e-8 | 60 | 192 | 140 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] |
| pfam00332 | Glyco_hydro_17 | 5.0e-95 | 1 | 201 | 204 | + Glycosyl hydrolases family 17. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36124.1 | 0 | 1 | 201 | 1 | 201 | unknown [Zea mays] |
| EMBL | CAA78834.1 | 0 | 1 | 201 | 134 | 334 | (1-3, 1-4)-beta-glucanase [Avena sativa] |
| EMBL | CAA80492.1 | 0 | 1 | 201 | 109 | 309 | beta glucanase [Triticum aestivum] |
| EMBL | CAA80493.1 | 0 | 1 | 201 | 134 | 334 | (1,3;1,4) beta glucanase [Triticum aestivum] |
| RefSeq | NP_001148461.1 | 0 | 1 | 201 | 136 | 336 | lichenase-2 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 1 | 201 | 106 | 306 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 1aq0_B | 0 | 1 | 201 | 106 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 1 | 201 | 106 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 2cyg_A | 0 | 1 | 201 | 109 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 1 | 201 | 113 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL900126 | 202 | 1 | 202 | 0 |
| FL872539 | 202 | 1 | 202 | 0 |
| FL902757 | 202 | 1 | 202 | 0 |
| FL875178 | 202 | 1 | 202 | 0 |
| FL864165 | 202 | 1 | 202 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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