Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052620m |
Family | GH16 |
Protein Properties | Length: 357 Molecular Weight: 38715.8 Isoelectric Point: 9.1973 |
Chromosome | Chromosome/Scaffold: 0109871 Start: 532 End: 1705 |
Description | xyloglucan endotransglucosylase/hydrolase 30 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH16 | 65 | 218 | 1.7e-25 |
TGSGFISSSMYQHGFFSASIKLPSDYTAGVVVAFYVSNGDVFEKRHDELDFEFLGNIRGKPWRVQTNVYGNGSVSRGREERYVLPFDPTTEFHRYSILWT AAAVAFYVDDVPVREVRRSPAMGGDFPSKPMSLYATVWDASTWATSGGRYRVNY |
Full Sequence |
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Protein Sequence Length: 357 Download |
MAAGAVAAAT AILVLAAAAA AVSGLPAINV TAMVFEEGFA PLFGQDNILR SADGRTVSLL 60 LDRSTGSGFI SSSMYQHGFF SASIKLPSDY TAGVVVAFYV SNGDVFEKRH DELDFEFLGN 120 IRGKPWRVQT NVYGNGSVSR GREERYVLPF DPTTEFHRYS ILWTAAAVAF YVDDVPVREV 180 RRSPAMGGDF PSKPMSLYAT VWDASTWATS GGRYRVNYRY GPFVASFTDL ALLGCRADPI 240 RMVPAAGGSC AADEEALRAS DVAVMTVEKL QAMRRFREHN MVYSYCYDTR RYPAALPECD 300 VVESERRRFK DSGHLRFALR RRGPRRSGRG AAAARAAASS AAADLAAAKT KQAADM* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd02183 | GH16_fungal_CRH1_transglycosylase | 8.0e-23 | 57 | 225 | 181 | + glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
cd00413 | Glyco_hydrolase_16 | 1.0e-26 | 43 | 213 | 181 | + glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
PLN03161 | PLN03161 | 8.0e-53 | 35 | 299 | 272 | + Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional | ||
pfam00722 | Glyco_hydro_16 | 3.0e-67 | 35 | 220 | 186 | + Glycosyl hydrolases family 16. | ||
cd02176 | GH16_XET | 8.0e-126 | 35 | 299 | 266 | + Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005618 | cell wall |
GO:0005975 | carbohydrate metabolic process |
GO:0006073 | cellular glucan metabolic process |
GO:0016762 | xyloglucan:xyloglucosyl transferase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACD03224.1 | 0 | 28 | 329 | 29 | 329 | xyloglucan endotransglucosylase/hydrolase 14 [Actinidia deliciosa] |
GenBank | EAZ21594.1 | 0 | 29 | 345 | 29 | 341 | hypothetical protein OsJ_05221 [Oryza sativa Japonica Group] |
RefSeq | NP_001045764.1 | 0 | 29 | 315 | 29 | 315 | Os02g0127800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146328.1 | 0 | 33 | 356 | 33 | 347 | hypothetical protein LOC100279904 [Zea mays] |
RefSeq | XP_002451458.1 | 0 | 29 | 356 | 38 | 371 | hypothetical protein SORBIDRAFT_04g002290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2uwc_B | 0 | 26 | 299 | 10 | 271 | A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 |
PDB | 2uwc_A | 0 | 26 | 299 | 10 | 271 | A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 |
PDB | 2uwa_C | 0 | 26 | 299 | 13 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
PDB | 2uwa_B | 0 | 26 | 299 | 13 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
PDB | 2uwa_A | 0 | 26 | 299 | 13 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |