Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052629m |
Family | CBM43 |
Protein Properties | Length: 482 Molecular Weight: 52205.9 Isoelectric Point: 5.4998 |
Chromosome | Chromosome/Scaffold: 0110699 Start: 1545 End: 3208 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 368 | 448 | 5.5e-23 |
WCVFDDGAKDKSKLPGNIQYACASGDCTALGYGCSCNGLDEKSNISYAFNMYFQMQDQDVRACDFDGLAKITDKNASARGC | |||
GH17 | 30 | 345 | 0 |
VGVNWGSQLSHPLLPESVVKMLKANGIARVKMFDADPWPVGALVDSGIEVMLGIPNDMLETMNSYGNAEDWVKENVTAYGDKLKLKYVAVGNEPFLKAYN GSFMKTTFPALKNIQKALDEAGVGDKVKAVVPLNADVYVSPDDKPSSGAFRPDIKDLMTDMVKFLHDHGAPFVVNIYPFLSLYQSDDFPFEFAFFDGGRN IQDKGGVSYSNVFDANYDTLVNALKKAGVPNLRVIVGEAGWPTDGNKNANLKLARRFYDGLLKKLSKNDGTPVRPGKMEVYLFGLFDEDMKSIAPGNFER HWGIFTYDGKPKFPMD |
Full Sequence |
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Protein Sequence Length: 482 Download |
MARLLRLLAG AAALLLAASA AMAGGDTVEV GVNWGSQLSH PLLPESVVKM LKANGIARVK 60 MFDADPWPVG ALVDSGIEVM LGIPNDMLET MNSYGNAEDW VKENVTAYGD KLKLKYVAVG 120 NEPFLKAYNG SFMKTTFPAL KNIQKALDEA GVGDKVKAVV PLNADVYVSP DDKPSSGAFR 180 PDIKDLMTDM VKFLHDHGAP FVVNIYPFLS LYQSDDFPFE FAFFDGGRNI QDKGGVSYSN 240 VFDANYDTLV NALKKAGVPN LRVIVGEAGW PTDGNKNANL KLARRFYDGL LKKLSKNDGT 300 PVRPGKMEVY LFGLFDEDMK SIAPGNFERH WGIFTYDGKP KFPMDLMGQG HDKLLSPVPD 360 VQYLPHQWCV FDDGAKDKSK LPGNIQYACA SGDCTALGYG CSCNGLDEKS NISYAFNMYF 420 QMQDQDVRAC DFDGLAKITD KNASARGCLF PIQVLSAGGR AAPGIGWAAA AALALAVMLF 480 M* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0001 | 263 | 337 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-16 | 367 | 436 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-29 | 367 | 450 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-72 | 30 | 345 | 319 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR38156.1 | 0 | 26 | 456 | 34 | 465 | unknown [Zea mays] |
GenBank | EAZ37505.1 | 0 | 25 | 453 | 28 | 456 | hypothetical protein OsJ_21839 [Oryza sativa Japonica Group] |
RefSeq | NP_001057968.1 | 0 | 25 | 453 | 28 | 456 | Os06g0590600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002275701.1 | 0 | 30 | 460 | 27 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002438620.1 | 0 | 20 | 460 | 30 | 472 | hypothetical protein SORBIDRAFT_10g022940 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 30 | 346 | 3 | 314 | A Chain A, Peanut Peroxidase |
PDB | 3ur8_A | 0 | 30 | 346 | 3 | 314 | A Chain A, Peanut Peroxidase |
PDB | 3ur7_B | 0 | 30 | 346 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 30 | 346 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 30 | 346 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |