Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052749m |
Family | PL1 |
Protein Properties | Length: 412 Molecular Weight: 44003.4 Isoelectric Point: 5.7591 |
Chromosome | Chromosome/Scaffold: 0113263 Start: 405 End: 2386 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 136 | 336 | 0 |
WIVFAADMTIRLREELLVNSYKTIDGRGARVHIGAGGACITLQYVSNVIIHNVHVHDCVPAGDANVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALW RCADGLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSAMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEMYAIGGSASPTINSQGNRYI A |
Full Sequence |
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Protein Sequence Length: 412 Download |
MAGAPKSTGI ALFPLLLLAA AAAASALPEL NSSVPDPATV VADFHSKVAS SRRRMQEAGG 60 GGCMTGNPID DCWRCAGTDW RQDRQRLADC GIGFGRNALG GKGGPLYVVT DSSDGDPVNP 120 APGTLRHAAI QEGPLWIVFA ADMTIRLREE LLVNSYKTID GRGARVHIGA GGACITLQYV 180 SNVIIHNVHV HDCVPAGDAN VRSSPTHYGW RTRSDGDGIS LFGARDVWVD HCALWRCADG 240 LVDAIMGSTA ITVSNSYFAH HDEVMLLGAS DAYLPDSAMQ VTIAFNRFGP GLVQRMPRCR 300 RGYFHIVNND YTSWEMYAIG GSASPTINSQ GNRYIAPADP NAKEVTKRVD TAEGQWSGWN 360 WRTEGDMMVN GAFFVPSGEG MEEIYDKASS TDPKSSALVD ALTQNAGVLG DP 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-20 | 217 | 332 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-59 | 149 | 334 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-68 | 142 | 337 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP54096.1 | 0 | 1 | 412 | 1 | 418 | pectate lyase 12 precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN31780.1 | 0 | 1 | 412 | 1 | 417 | unknown [Zea mays] |
GenBank | EEC67092.1 | 0 | 1 | 412 | 1 | 418 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
RefSeq | NP_001147972.1 | 0 | 1 | 412 | 1 | 417 | pectate lyase 12 [Zea mays] |
RefSeq | XP_002464529.1 | 0 | 1 | 412 | 1 | 415 | hypothetical protein SORBIDRAFT_01g020180 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 67 | 409 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 67 | 409 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 98 | 335 | 21 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 148 | 334 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000000004 | 158 | 346 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |