Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052890m |
Family | CBM43 |
Protein Properties | Length: 449 Molecular Weight: 47639.6 Isoelectric Point: 6.2854 |
Chromosome | Chromosome/Scaffold: 0112135 Start: 1926 End: 3451 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 346 | 427 | 1.6e-31 |
WCVANASAGEARLQATLDWACGHGADCSDIQAGAPCFEPDTVVAHASHAFNSYYQRSGRASGTCDFAGAAYVVYHAPKIGNC | |||
GH17 | 2 | 329 | 0 |
GNNLPSTASVVKLLKQSGITTVRLYDANPRVLKALANTGITVMVMLPNDHLAAAAADPASARRWVLRNVAAHYPATRIHGVAVGNEVFEEASNLTRQLVP AMANVHAALVRLGLDEAVKVSTPLAFTALQESWPPSAGRFRDDIARPVMKPMLDFLERTGSYLTVNAYPFFAYVEQPDKISLDYALGSAKAGVRDPVTGL VYHSLLDAQLDATETLLGEGHPRARAYVSESGWPSGGSRRSGRSLDLEAGGGAGAPAATIANAKAYNNYLINRVLSCDTGTPYRPDADMDVYIFALFNEN DKGCGADDIEQHFGLFYPNRTKVYEFDF |
Full Sequence |
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Protein Sequence Length: 449 Download |
AGNNLPSTAS VVKLLKQSGI TTVRLYDANP RVLKALANTG ITVMVMLPND HLAAAAADPA 60 SARRWVLRNV AAHYPATRIH GVAVGNEVFE EASNLTRQLV PAMANVHAAL VRLGLDEAVK 120 VSTPLAFTAL QESWPPSAGR FRDDIARPVM KPMLDFLERT GSYLTVNAYP FFAYVEQPDK 180 ISLDYALGSA KAGVRDPVTG LVYHSLLDAQ LDATETLLGE GHPRARAYVS ESGWPSGGSR 240 RSGRSLDLEA GGGAGAPAAT IANAKAYNNY LINRVLSCDT GTPYRPDADM DVYIFALFNE 300 NDKGCGADDI EQHFGLFYPN RTKVYEFDFR GAAPPAPAPA PSASSWCVAN ASAGEARLQA 360 TLDWACGHGA DCSDIQAGAP CFEPDTVVAH ASHAFNSYYQ RSGRASGTCD FAGAAYVVYH 420 APKIGNCVLP SQVWIQEAAA KSEGYAAI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 7.0e-26 | 346 | 416 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-40 | 346 | 428 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 7.0e-82 | 2 | 329 | 329 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001151472.1 | 0 | 2 | 443 | 36 | 487 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | NP_001151472.1 | 5e-39 | 328 | 445 | 456 | 579 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002462967.1 | 0 | 2 | 448 | 36 | 500 | hypothetical protein SORBIDRAFT_02g035480 [Sorghum bicolor] |
RefSeq | XP_002462968.1 | 0 | 3 | 440 | 38 | 485 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
RefSeq | XP_002462968.1 | 9.99967e-42 | 328 | 448 | 457 | 581 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 2 | 329 | 9 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 3 | 329 | 10 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 3 | 329 | 10 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 3 | 329 | 10 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 2 | 329 | 10 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE288311 | 285 | 63 | 324 | 0 |
DR785215 | 290 | 145 | 411 | 0 |
EC895176 | 267 | 63 | 306 | 0 |
DY234276 | 265 | 63 | 304 | 0 |
DR785214 | 258 | 63 | 297 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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