Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052892m |
Family | GH28 |
Protein Properties | Length: 379 Molecular Weight: 40825.1 Isoelectric Point: 7.2033 |
Chromosome | Chromosome/Scaffold: 0112095 Start: 1570 End: 3472 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 11 | 352 | 0 |
GGTLLYVPPGVWLTGPFNLTSHMTLFLARGAVIRATQDTSSWPLVDPLPSYGRGRELPGGRYMSLIHGNGLQDVFITGENGTIDGQGSVWWDMWKKRTLP FTRPHLLELVYSTDVIVSNVVFQDSPFWNIHPVYCSNVVIANVTVLAPHDSPNTDGIDLDSSSNVCIEDSYISAGDDLISIKSGWDEYGIAFARPSSGIT IRRITGSSPFAGFAVGSETSGGVENVFVEHLNFFSMGVGIHIKTNSGRGGFIRNITISEVTLNGARYGLRIAGDVGGHPDTSYNPNVLPVVDSVTIKNVW GQNIRQAGLIRGIRNSVFSRICLSNVKLYGSASIGPWKCRDV |
Full Sequence |
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Protein Sequence Length: 379 Download |
ARIERRRGAR GGTLLYVPPG VWLTGPFNLT SHMTLFLARG AVIRATQDTS SWPLVDPLPS 60 YGRGRELPGG RYMSLIHGNG LQDVFITGEN GTIDGQGSVW WDMWKKRTLP FTRPHLLELV 120 YSTDVIVSNV VFQDSPFWNI HPVYCSNVVI ANVTVLAPHD SPNTDGIDLD SSSNVCIEDS 180 YISAGDDLIS IKSGWDEYGI AFARPSSGIT IRRITGSSPF AGFAVGSETS GGVENVFVEH 240 LNFFSMGVGI HIKTNSGRGG FIRNITISEV TLNGARYGLR IAGDVGGHPD TSYNPNVLPV 300 VDSVTIKNVW GQNIRQAGLI RGIRNSVFSR ICLSNVKLYG SASIGPWKCR DVSGGALDVQ 360 PSPCTELAST SETGFCTT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-21 | 15 | 365 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-23 | 90 | 272 | 187 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-25 | 90 | 369 | 292 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-33 | 83 | 356 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-49 | 15 | 319 | 348 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT44156.1 | 0 | 1 | 377 | 72 | 473 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EAY99223.1 | 0 | 1 | 377 | 72 | 447 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
RefSeq | NP_001056466.1 | 0 | 1 | 377 | 72 | 447 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149385.1 | 0 | 13 | 377 | 80 | 446 | LOC100283011 [Zea mays] |
RefSeq | XP_002441600.1 | 0 | 1 | 378 | 62 | 439 | hypothetical protein SORBIDRAFT_09g030140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-33 | 9 | 342 | 56 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-33 | 9 | 342 | 56 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-33 | 9 | 342 | 56 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-33 | 9 | 342 | 56 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-16 | 21 | 353 | 51 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG891099 | 278 | 77 | 354 | 0 |
GO864447 | 296 | 82 | 377 | 0 |
JG866877 | 248 | 132 | 379 | 0 |
EG383332 | 278 | 50 | 327 | 0 |
JG866877 | 33 | 105 | 137 | 0.014 |
Sequence Alignments (This image is cropped. Click for full image.) |
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