Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052911m |
Family | GT47 |
Protein Properties | Length: 603 Molecular Weight: 68149.4 Isoelectric Point: 6.5161 |
Chromosome | Chromosome/Scaffold: 0109387 Start: 437 End: 2881 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 143 | 483 | 0 |
GGRYIYVHELPPRFNEDMLRDCEKLSVWTNMCRFMSNDGLGPPLSDEEGVFSSTGWYGTNQFSVDVIFGNRMKQYECLTNDSSIAAAVFVPFYAGFDIAR YLWGYNISTRDAASLDLVDWLMKKPEWNVMGGRDHFLVAGRITWDFRRLTEEESDWGSKLLFLPAAKNMSMLVVESSPWNSNDFGIPYPTYFHPAKDADV FLWQDRMRSLERPWLFSFAGAPRPGDPMSIRGQLIDQCRSSSVCKLLECDLGESKCHSPSTIMKMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHP GSAYVQYTWHLPKNYTRYSVFIPEDDIRAKNASIEERLKSI |
Full Sequence |
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Protein Sequence Length: 603 Download |
MRRRPVLPSH HDDMDKGGGK PASSRLCFLA TLCAMFWVLI FYFHFAVVSN EPDASAAQAG 60 GVRIARARLQ LPEPDGAVRH DMPLVPPARA SEPPPSVARP KEVVVEEKPA AGARQEEAQP 120 KVAAPYPFER ALKTAENKSD PCGGRYIYVH ELPPRFNEDM LRDCEKLSVW TNMCRFMSND 180 GLGPPLSDEE GVFSSTGWYG TNQFSVDVIF GNRMKQYECL TNDSSIAAAV FVPFYAGFDI 240 ARYLWGYNIS TRDAASLDLV DWLMKKPEWN VMGGRDHFLV AGRITWDFRR LTEEESDWGS 300 KLLFLPAAKN MSMLVVESSP WNSNDFGIPY PTYFHPAKDA DVFLWQDRMR SLERPWLFSF 360 AGAPRPGDPM SIRGQLIDQC RSSSVCKLLE CDLGESKCHS PSTIMKMFQS SLFCLQPQGD 420 SYTRRSAFDS MLAGCIPVFF HPGSAYVQYT WHLPKNYTRY SVFIPEDDIR AKNASIEERL 480 KSIHPDVVKN MREEVINLIP RVIYADPRSK LETLKDAFDV SIEAIINKVT KLRRDIIAGR 540 EDKDFIEENS WKYSLLEDGQ RTIGPHEWDP FFSKPKEKGG DPSSSAAEAA KNSWKSEQRG 600 QN* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam03016 | Exostosin | 2.0e-71 | 141 | 483 | 359 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC74507.1 | 0 | 1 | 602 | 4 | 604 | hypothetical protein OsI_09988 [Oryza sativa Indica Group] |
RefSeq | NP_001048945.1 | 0 | 1 | 602 | 4 | 604 | Os03g0144800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147481.1 | 0 | 1 | 602 | 1 | 603 | xyloglucan galactosyltransferase KATAMARI 1 [Zea mays] |
Swiss-Prot | Q8H038 | 0 | 14 | 602 | 1 | 588 | KATAM_ORYSJ RecName: Full=Xyloglucan galactosyltransferase KATAMARI1 homolog |
RefSeq | XP_002468517.1 | 0 | 1 | 602 | 1 | 599 | hypothetical protein SORBIDRAFT_01g047270 [Sorghum bicolor] |