| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00053162m |
| Family | PL1 |
| Protein Properties | Length: 401 Molecular Weight: 42969.4 Isoelectric Point: 5.871 |
| Chromosome | Chromosome/Scaffold: 011256 Start: 3904 End: 6257 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 130 | 327 | 0 |
| ITFARDMTIRPKEGLVVSSYKTVDGRGAAVVVGDGGACFVLHNVNHVIIHGLAIRDCKPARTPLASSSSSASGGMSDGDGITVLSSTDVWVDHCTLEACT DGLIDVTKGSTRVTLSNNLLRNHNKAMLLGHSDDFPDDKDMKVTVAFNRFGPGLVQRMPRCRFGLFHVINNDYINWQLYAIGGSASPTILSHGNRFLA | |||
| Full Sequence |
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| Protein Sequence Length: 401 Download |
| MAFLIFLCFS SFLSLSMSSA LPLTIINSSA AGQEVVQDAV RSMNMSLRRR MLGDDDCGTG 60 NPVDDCWRSD PSCADNRQRL ADCAIGFGRD ATGGKNGKTY VVTDPSDDDP AAPAPGTLRY 120 GLVQEEPLWI TFARDMTIRP KEGLVVSSYK TVDGRGAAVV VGDGGACFVL HNVNHVIIHG 180 LAIRDCKPAR TPLASSSSSA SGGMSDGDGI TVLSSTDVWV DHCTLEACTD GLIDVTKGST 240 RVTLSNNLLR NHNKAMLLGH SDDFPDDKDM KVTVAFNRFG PGLVQRMPRC RFGLFHVINN 300 DYINWQLYAI GGSASPTILS HGNRFLADKE KEVTKRKEAP ESEWSTWTWI SEGDMMLNGA 360 FFRSSGSARP DVDTPSFAKS VSSVSSMTAS AGVLSVGNMS * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-24 | 214 | 325 | 123 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-51 | 169 | 325 | 165 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-58 | 135 | 327 | 204 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF19195.1 | 0 | 2 | 395 | 3 | 400 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
| GenBank | ABV32549.1 | 0 | 35 | 395 | 39 | 406 | pectase lyase [Prunus persica] |
| DDBJ | BAE48664.1 | 0 | 35 | 395 | 39 | 406 | Pectate lyase [Prunus mume] |
| DDBJ | BAF43572.1 | 0 | 35 | 395 | 39 | 406 | pectate lyase [Prunus persica] |
| RefSeq | NP_001055106.1 | 0 | 56 | 395 | 36 | 366 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 61 | 369 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 61 | 369 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-18 | 136 | 327 | 56 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3krg_A | 3e-16 | 133 | 302 | 119 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
| PDB | 1bn8_A | 5e-16 | 133 | 302 | 140 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 20 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL903996 | 222 | 180 | 401 | 0 |
| FL903995 | 225 | 24 | 248 | 0 |
| FG606120 | 317 | 57 | 368 | 0 |
| HO778688 | 342 | 30 | 366 | 0 |
| DY278910 | 317 | 57 | 368 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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