Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00053585m |
Family | GT8 |
Protein Properties | Length: 680 Molecular Weight: 77712.9 Isoelectric Point: 9.6068 |
Chromosome | Chromosome/Scaffold: 011200 Start: 5186 End: 9953 |
Description | galacturonosyltransferase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 337 | 652 | 0 |
CLSMRLTIDYYLLSPEKRKFPNSENLENPELYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWL NSSYCPVLKQLESAAMKEYYFKADRPKTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVDLNGNVNGAVETCGESF HRFDKYLNFSNPNISQNFDPNACGWAYGMNMFDLEEWKRKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPTIERSEIDN AAVIHYNGNMKPWLEI |
Full Sequence |
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Protein Sequence Length: 680 Download |
METTSHFLTE NSLNRNKKNS KVLYSVRELS DARTAPTATC VNGPLSVTEG RSSASTECTG 60 RHHSSPAPRK PARALPSHIQ SVPRSDPSRP AMAIRAGRSA LVALAFLLAA SPCLQARVDQ 120 LYHGRQVSDW SRQINFELQN LSSSQKDGRH LLASPKEITH RKLRARTGVR KKMEVVQQDD 180 EALVKLENTG IERSKAVDSA VLGKYSIWRR ENENEKADSR VRQMRDQMIM ARIYSVLAKS 240 RDKLDLYQEL LARLKESQRS LGEATADAEL PKSALERMKA MAQVLSKARD LLYDCKAITE 300 RLRVMLLSAD EQVRSLKKQS TFLSQLAAKT IPNGIHCLSM RLTIDYYLLS PEKRKFPNSE 360 NLENPELYHY ALFSDNVLAA SVVVNSTIMN AKEPEKHVFH LVTDKLNFGA MNMWFLLNPP 420 GDATIHVENV DDFKWLNSSY CPVLKQLESA AMKEYYFKAD RPKTLSAGSS NLKYRNPKYL 480 SMLNHLRFYL PQVYPKLNKI LFLDDDIVVQ RDLTGLWEVD LNGNVNGAVE TCGESFHRFD 540 KYLNFSNPNI SQNFDPNACG WAYGMNMFDL EEWKRKDITG IYHKWQNMNE NRLLWKLGTL 600 PPGLLTFYKL THPLDKSWHV LGLGYNPTIE RSEIDNAAVI HYNGNMKPWL EIAMTKYRPY 660 WTKYINYEHP YIHGCKISQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02910 | PLN02910 | 0 | 137 | 679 | 543 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
PLN02829 | PLN02829 | 0 | 178 | 677 | 504 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 0 | 217 | 678 | 468 | + Probable galacturonosyltransferase | ||
PLN02523 | PLN02523 | 0 | 218 | 675 | 479 | + galacturonosyltransferase | ||
PLN02718 | PLN02718 | 0 | 218 | 677 | 463 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN33451.1 | 0 | 92 | 679 | 1 | 590 | unknown [Zea mays] |
GenBank | EEC81302.1 | 0 | 96 | 679 | 2 | 588 | hypothetical protein OsI_24438 [Oryza sativa Indica Group] |
GenBank | EEC84934.1 | 0 | 173 | 679 | 189 | 695 | hypothetical protein OsI_32147 [Oryza sativa Indica Group] |
RefSeq | NP_001130678.1 | 0 | 92 | 679 | 1 | 588 | hypothetical protein LOC100191781 [Zea mays] |
RefSeq | XP_002466644.1 | 0 | 92 | 679 | 1 | 588 | hypothetical protein SORBIDRAFT_01g011560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ga8_A | 0.0002 | 476 | 649 | 75 | 252 | A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer With Retention Through The Synthesis And Analysis Of Bisubstrate Glycomimetics Of Trehalose-6-Phosphate Synthase |
PDB | 1g9r_A | 0.0002 | 476 | 649 | 75 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ss9_A | 0.0004 | 476 | 649 | 75 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT042159 | 324 | 356 | 679 | 0 |
GO842648 | 328 | 353 | 680 | 0 |
GO873566 | 314 | 302 | 615 | 0 |
GT033965 | 314 | 331 | 644 | 0 |
GO873566 | 31 | 607 | 637 | 0.004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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