y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00053609m |
Family | GH14 |
Protein Properties | Length: 368 Molecular Weight: 41587 Isoelectric Point: 5.0131 |
Chromosome | Chromosome/Scaffold: 0115479 Start: 201 End: 3366 |
Description | beta-amylase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 90 | 364 | 0 |
ASLPMGIINSHCQLVDPEGVRAELRHLKSLNVDGVVVDCWWGIVEAWIPRKYEWSGYRDLFGIIKEFKLKVQVVLSFHGSGETGSGDMLISLPKWIMEIA KENQDIFFTDREGRRNTECLSWGIDKERVLRGRTGIEVYFDFMRSFHMEFRNLSEEGLISAIEIGLGASGELRYPSFPERMGWKYPGIGEFQCYDRYMQK NLRQSALSRGHLFWARGPDNAGYYNSRPHETGFFCDEGDYDSYYGRFFLNWYSAILINHVDQVLSLAALAFDGAE |
Full Sequence |
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Protein Sequence Length: 368 Download |
MFQVASGDAP AFINALNSYA IGTPSSLQTD DCLSPSSLDS VVAERSIKTE NFGNSSSVNS 60 LNCMDNNQLL RSSAMLAGDY TKTPYIPVYA SLPMGIINSH CQLVDPEGVR AELRHLKSLN 120 VDGVVVDCWW GIVEAWIPRK YEWSGYRDLF GIIKEFKLKV QVVLSFHGSG ETGSGDMLIS 180 LPKWIMEIAK ENQDIFFTDR EGRRNTECLS WGIDKERVLR GRTGIEVYFD FMRSFHMEFR 240 NLSEEGLISA IEIGLGASGE LRYPSFPERM GWKYPGIGEF QCYDRYMQKN LRQSALSRGH 300 LFWARGPDNA GYYNSRPHET GFFCDEGDYD SYYGRFFLNW YSAILINHVD QVLSLAALAF 360 DGAEIVVK 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00197 | PLN00197 | 2.0e-80 | 15 | 368 | 359 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 1.0e-93 | 86 | 362 | 279 | + beta-amylase | ||
PLN02801 | PLN02801 | 3.0e-106 | 85 | 365 | 281 | + beta-amylase | ||
PLN02905 | PLN02905 | 4.0e-162 | 34 | 368 | 344 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 24 | 368 | 349 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI29216.1 | 0 | 2 | 368 | 85 | 459 | unnamed protein product [Vitis vinifera] |
GenBank | EAY84334.1 | 0 | 1 | 368 | 40 | 411 | hypothetical protein OsI_05709 [Oryza sativa Indica Group] |
GenBank | EAZ21608.1 | 0 | 69 | 368 | 88 | 385 | hypothetical protein OsJ_05236 [Oryza sativa Japonica Group] |
RefSeq | XP_002270680.1 | 0 | 2 | 368 | 143 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002451472.1 | 0 | 1 | 368 | 119 | 491 | hypothetical protein SORBIDRAFT_04g002450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1q6g_A | 0 | 85 | 365 | 11 | 290 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1v3i_A | 0 | 85 | 365 | 11 | 290 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1wdp_A | 0 | 85 | 365 | 11 | 290 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1q6c_A | 0 | 85 | 365 | 11 | 290 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 85 | 365 | 11 | 290 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO329361 | 220 | 44 | 263 | 0 |
CJ908248 | 235 | 133 | 367 | 0 |
CJ908112 | 228 | 135 | 362 | 0 |
GO367915 | 272 | 97 | 368 | 0 |
CA112507 | 223 | 25 | 247 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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