Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00053716m |
Family | GT47 |
Protein Properties | Length: 502 Molecular Weight: 56740.5 Isoelectric Point: 8.1225 |
Chromosome | Chromosome/Scaffold: 0108765 Start: 1125 End: 2630 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 95 | 438 | 0 |
SCRGRYVYIHDLPPRFNADILGNCHNWYPWHNMCGYLENGGLGEPVDNADGVFADQGWYATDHFGLDTIFHRRMKQYDCLTDDSSRAAAVFVPFYAGFDI VQHLWGVNSTAREKDALSLDLVDWLTRRPEWRAMGGRDHFFLSGRTAYDHQRQTDSDSEWGNKLLPLPAVQNMTVLFVEKLPWTSFDFAIPYPTYFHPGK DAQILEWQRRMRAMKREWLFSFAGGARNDPYSIRHHLIRQCGSSSFCKLVQCRKNERNCLIPSTFMRVFQGTRFCLQPTGDTMTRRSAFDAIMAGCVPVF FHPDSAYTQYRWHLPAAHETYSVLIPEADVRAGNVSIEETLRRI |
Full Sequence |
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Protein Sequence Length: 502 Download |
MEKTGAHGGK RWLPRLLLLA AMSWLLMVYF HLAVFGTPPV SAPHASLVAV PSDGDDGQRF 60 RLRQQEQLKK IGSASVGALP AVAERRPRGG GDEASCRGRY VYIHDLPPRF NADILGNCHN 120 WYPWHNMCGY LENGGLGEPV DNADGVFADQ GWYATDHFGL DTIFHRRMKQ YDCLTDDSSR 180 AAAVFVPFYA GFDIVQHLWG VNSTAREKDA LSLDLVDWLT RRPEWRAMGG RDHFFLSGRT 240 AYDHQRQTDS DSEWGNKLLP LPAVQNMTVL FVEKLPWTSF DFAIPYPTYF HPGKDAQILE 300 WQRRMRAMKR EWLFSFAGGA RNDPYSIRHH LIRQCGSSSF CKLVQCRKNE RNCLIPSTFM 360 RVFQGTRFCL QPTGDTMTRR SAFDAIMAGC VPVFFHPDSA YTQYRWHLPA AHETYSVLIP 420 EADVRAGNVS IEETLRRIPP DVAERMTETV IGLIPRLVYA DPRSRLETLR DAVDVTVGAI 480 IERVNKLREE MGGGGRGAQQ S* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam03016 | Exostosin | 6.0e-70 | 95 | 438 | 360 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO17348.1 | 0 | 1 | 501 | 1 | 503 | Hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EAY88513.1 | 0 | 1 | 501 | 1 | 503 | hypothetical protein OsI_09986 [Oryza sativa Indica Group] |
RefSeq | NP_001048944.1 | 0 | 96 | 501 | 28 | 432 | Os03g0144500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147481.1 | 0 | 8 | 494 | 18 | 540 | xyloglucan galactosyltransferase KATAMARI 1 [Zea mays] |
RefSeq | XP_002468518.1 | 0 | 1 | 494 | 1 | 497 | hypothetical protein SORBIDRAFT_01g047280 [Sorghum bicolor] |