Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00053907m |
Family | GT13 |
Protein Properties | Length: 322 Molecular Weight: 37409.4 Isoelectric Point: 7.2697 |
Chromosome | Chromosome/Scaffold: 021890 Start: 4177 End: 7142 |
Description | alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT13 | 7 | 316 | 0 |
RYQTSVASKFPLFISQDGTNGAVKKKALDYKQITYMQHVNLEPVRTERPGELTAYYKIAKHYKWALDELFIKHNFSRVIILEDDMEIAPDFFDYFEAAAK LLDNDKTIMAVSSWNDNGQKQFVNDPKALYRSDFFPGLGWMLTKSTWLELSPKWPKAYWDDWVRLKEIHGNRQFIRPEICRTYNFGKHGSSLGQFFEQYL EPIKLNDVHIDWNSEDLSYLGEDKFSTKFGKEVASATPLHGSDAVLKAHSMATDVRIQYDDQEDFERIARQFGIFEEWKDGIPRTAYKGVVVFRYKSSPR RIFLVSPDSV |
Full Sequence |
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Protein Sequence Length: 322 Download |
MNNTCSRYQT SVASKFPLFI SQDGTNGAVK KKALDYKQIT YMQHVNLEPV RTERPGELTA 60 YYKIAKHYKW ALDELFIKHN FSRVIILEDD MEIAPDFFDY FEAAAKLLDN DKTIMAVSSW 120 NDNGQKQFVN DPKALYRSDF FPGLGWMLTK STWLELSPKW PKAYWDDWVR LKEIHGNRQF 180 IRPEICRTYN FGKHGSSLGQ FFEQYLEPIK LNDVHIDWNS EDLSYLGEDK FSTKFGKEVA 240 SATPLHGSDA VLKAHSMATD VRIQYDDQED FERIARQFGI FEEWKDGIPR TAYKGVVVFR 300 YKSSPRRIFL VSPDSVRQLG V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06532 | Glyco_transf_25 | 0.0006 | 28 | 116 | 96 | + Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis. | ||
cd02514 | GT13_GLCNAC-TI | 6.0e-152 | 7 | 315 | 315 | + GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13. | ||
pfam03071 | GNT-I | 6.0e-172 | 7 | 320 | 319 | + GNT-I family. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) EC:2.4.1.101 transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localised to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C-terminus. |
Gene Ontology | |
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GO Term | Description |
GO:0000139 | Golgi membrane |
GO:0003827 | alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity |
GO:0006487 | protein N-linked glycosylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF83572.1 | 0 | 7 | 321 | 111 | 425 | unknown [Zea mays] |
GenBank | ACG37957.1 | 0 | 7 | 321 | 128 | 442 | N-acetylglucosaminyltransferase I [Zea mays] |
RefSeq | NP_001048631.1 | 0 | 7 | 321 | 128 | 442 | Os02g0832800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001142278.1 | 0 | 7 | 321 | 128 | 442 | hypothetical protein LOC100274447 [Zea mays] |
RefSeq | XP_002441861.1 | 0 | 7 | 321 | 128 | 442 | hypothetical protein SORBIDRAFT_08g003660 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2apc_A | 0 | 13 | 315 | 29 | 333 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 2am5_A | 0 | 13 | 315 | 29 | 333 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 2am4_A | 0 | 13 | 315 | 29 | 333 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 2am3_A | 0 | 13 | 315 | 29 | 333 | A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I In Complex With Udp-Glucose |
PDB | 1foa_A | 0 | 13 | 315 | 35 | 339 | A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT047470 | 288 | 7 | 294 | 0 |
JG822016 | 257 | 24 | 280 | 0 |
GO838868 | 257 | 65 | 321 | 0 |
EH731153 | 290 | 32 | 321 | 0 |
GD013518 | 221 | 49 | 269 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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