Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00054028m |
Family | AA3 |
Protein Properties | Length: 553 Molecular Weight: 60257.2 Isoelectric Point: 8.443 |
Chromosome | Chromosome/Scaffold: 021117 Start: 78 End: 2107 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 14 | 551 | 0 |
APLVSRYNYIVIGGGTSGCPLAATLSEHSRVLLLERGGLPYRNMSNQQHFTDALADTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRASNDYVR AAGWDARLVNSSYRWVERALVFRPGVPPWQVALRDALLEAGVTPDNGFTFDHVTGTKIGGTIFDSSGQRHTAADFLRHARPGGLTVLLYATVSRILFRQQ EGAPYPVAYGVVFADPLGVQHRVYLQDGGRNEVILAAGTLGSPQLLMLSGVGPQAHLEAHGIQVLVDQPMVGQGVADNPMNSVFIPSPVPVALSLVQVVG ITRSGSFIEGVSGSEFGIPVSDGARRLARSFGLFSPQTGQLGTLPPKQRTPEALQRAAEAMRRLDRRAFRGGFILEKILGPVSSGHIELRSADPRANPAV TFNYFQEEEDLDRCVHGIETIERVIQSQAFANFTYANASVESIFTDSANFPVNLLPRHANDSRTPEQYCKDTVMTIWHYHGGCQVGAVVDDDYRVFGVQR LRVIDSSTFKYSPGTNPQATVMMLGRYMGVKIQAERWR |
Full Sequence |
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Protein Sequence Length: 553 Download |
ELENLRFVRR AQDAPLVSRY NYIVIGGGTS GCPLAATLSE HSRVLLLERG GLPYRNMSNQ 60 QHFTDALADT SPASPAQRFI SEDGVVNARA RVLGGGSCLN AGFYTRASND YVRAAGWDAR 120 LVNSSYRWVE RALVFRPGVP PWQVALRDAL LEAGVTPDNG FTFDHVTGTK IGGTIFDSSG 180 QRHTAADFLR HARPGGLTVL LYATVSRILF RQQEGAPYPV AYGVVFADPL GVQHRVYLQD 240 GGRNEVILAA GTLGSPQLLM LSGVGPQAHL EAHGIQVLVD QPMVGQGVAD NPMNSVFIPS 300 PVPVALSLVQ VVGITRSGSF IEGVSGSEFG IPVSDGARRL ARSFGLFSPQ TGQLGTLPPK 360 QRTPEALQRA AEAMRRLDRR AFRGGFILEK ILGPVSSGHI ELRSADPRAN PAVTFNYFQE 420 EEDLDRCVHG IETIERVIQS QAFANFTYAN ASVESIFTDS ANFPVNLLPR HANDSRTPEQ 480 YCKDTVMTIW HYHGGCQVGA VVDDDYRVFG VQRLRVIDSS TFKYSPGTNP QATVMMLGRY 540 MGVKIQAERW RK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 1.0e-15 | 394 | 538 | 152 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 3.0e-28 | 23 | 538 | 564 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
PRK02106 | PRK02106 | 1.0e-29 | 19 | 290 | 329 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 2.0e-45 | 20 | 539 | 573 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 4 | 549 | 559 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF65820.1 | 0 | 4 | 552 | 40 | 589 | AF251031_1 putative mandelonitrile lyase [Oryza sativa] |
GenBank | ACN28873.1 | 0 | 57 | 552 | 1 | 496 | unknown [Zea mays] |
GenBank | EAY79265.1 | 0 | 4 | 552 | 40 | 588 | hypothetical protein OsI_34381 [Oryza sativa Indica Group] |
RefSeq | NP_001065107.1 | 0 | 1 | 552 | 35 | 586 | Os10g0524500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002467623.1 | 0 | 2 | 552 | 32 | 582 | hypothetical protein SORBIDRAFT_01g031110 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 1 | 549 | 8 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 1 | 549 | 8 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 1 | 549 | 8 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 1 | 549 | 8 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 1 | 549 | 8 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796743 | 535 | 21 | 552 | 0 |
EE156290 | 277 | 2 | 278 | 0 |
EE026648 | 272 | 145 | 416 | 0 |
EE157591 | 269 | 2 | 270 | 0 |
EE168373 | 268 | 2 | 269 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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