| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00054240m |
| Family | GT5 |
| Protein Properties | Length: 604 Molecular Weight: 65773.5 Isoelectric Point: 8.6645 |
| Chromosome | Chromosome/Scaffold: 021352 Start: 330 End: 3940 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 78 | 575 | 0 |
| NVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVSEIKVGDRYETVRFFHCYKRGVDRVFIDHPSFLERVWGKTGEKIY GPDAGVDYKDNQRRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSSYLKSNYQSNGIYRNAKTAFCIHNISYQGRFAFSDYPELNLP ERFRSSFDFIDGYEKPVEGRKINWMKAGILEADKVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIATKYDVSTAIAAKAL NKEALQAAAGLPVDRKIPLVAFVGRLEEQKGPDVMAAAIPQLMEEDVQIVLLGTGKKKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSR FEPCGLIQLQGMRYGTPCVCASTGGLVDTVIEGKTGFHMGRLNVDCKVVEPADVQKVASTLKRAIRVVGTPAYEEMVRNCMIQDLSWKGPAKNWEKVL | |||
| Full Sequence |
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| Protein Sequence Length: 604 Download |
| MAALATSQLA TTHAGFGLGG DTSMFRRGVQ GLRGPRPSAG ALSVRTSARA APRQQSRRPQ 60 RGGGRLPSLV VCAAAGMNVV FVGAEMAPWS KTGGLGDVLG GLPPAMAANG HRVMVISPRY 120 DQYKDAWDTS VVSEIKVGDR YETVRFFHCY KRGVDRVFID HPSFLERVWG KTGEKIYGPD 180 AGVDYKDNQR RFSLLCQAAL EAPRILSLNN NPYFSGPYGE DVVFVCNDWH TGPLSSYLKS 240 NYQSNGIYRN AKTAFCIHNI SYQGRFAFSD YPELNLPERF RSSFDFIDGY EKPVEGRKIN 300 WMKAGILEAD KVLTVSPYYA EELISGIARG CELDNIMRLT GITGIVNGMD VSEWDPSKDK 360 YIATKYDVST AIAAKALNKE ALQAAAGLPV DRKIPLVAFV GRLEEQKGPD VMAAAIPQLM 420 EEDVQIVLLG TGKKKFERML MSAEEKYPDK VRAVVKFNAA LAHHIMAGAD LLAVTSRFEP 480 CGLIQLQGMR YGTPCVCAST GGLVDTVIEG KTGFHMGRLN VDCKVVEPAD VQKVASTLKR 540 AIRVVGTPAY EEMVRNCMIQ DLSWKGPAKN WEKVLLSLGV AGSQPGIQGE EIAPLAKENV 600 AAP* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-82 | 77 | 585 | 532 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 4.0e-109 | 77 | 573 | 516 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 1.0e-135 | 77 | 574 | 509 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 1.0e-168 | 77 | 578 | 515 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-174 | 78 | 575 | 511 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ06271.1 | 0 | 1 | 603 | 1 | 609 | granule-bound starch synthase precursor [Pennisetum glaucum] |
| GenBank | ABU98327.1 | 0 | 1 | 603 | 1 | 605 | granule-bound starch synthase I [Sarga leioclada] |
| GenBank | ADA61162.1 | 0 | 74 | 596 | 1 | 523 | S-type granule bound starch synthase 1 [Panicum miliaceum] |
| DDBJ | BAC06486.1 | 0 | 1 | 603 | 1 | 605 | granule bound starch synthase [Setaria italica] |
| RefSeq | NP_001105001.2 | 0 | 1 | 603 | 1 | 605 | waxy1 precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 77 | 603 | 10 | 536 | 1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution |
| PDB | 3vue_A | 0 | 77 | 603 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 77 | 578 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 77 | 578 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 77 | 578 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| AJ568414 | 535 | 70 | 604 | 0 |
| HO825853 | 518 | 85 | 602 | 0 |
| HO629148 | 530 | 76 | 604 | 0 |
| DT643443 | 304 | 109 | 412 | 0 |
| DV516889 | 292 | 121 | 412 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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