Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00054407m |
Family | GH28 |
Protein Properties | Length: 318 Molecular Weight: 34539.5 Isoelectric Point: 9.3835 |
Chromosome | Chromosome/Scaffold: 0212365 Start: 12 End: 1285 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 317 | 0 |
DIACSSSQSAIVIIPKAKRYLTKHVTFSSPCKSNIMLMIEGTLMAPPRGSLWSKKTNRHWILFNGVNGLTVTGGGTIDGNGKLWWQKSCKFSSRVPCKQA PTALTFSSCKNLRLENLKLRNSQQIHMSVEDCSHVKLAHLSITAPGTSPNTDGIHIARSRRVHVTDCTIKTGDDCISIEDGTENLHVKNILCGPGHGISI GSLGDHGSEAYVINVTVDSVTLHGTTNGARIKTWQGGRGYAKNIIFRNTIMD |
Full Sequence |
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Protein Sequence Length: 318 Download |
MASNVFVFCA TVLLSFFLCG VGADGDINGT TRRDRSLESK VFDVRKYGAH GDGHHDDTKA 60 LVKAWDIACS SSQSAIVIIP KAKRYLTKHV TFSSPCKSNI MLMIEGTLMA PPRGSLWSKK 120 TNRHWILFNG VNGLTVTGGG TIDGNGKLWW QKSCKFSSRV PCKQAPTALT FSSCKNLRLE 180 NLKLRNSQQI HMSVEDCSHV KLAHLSITAP GTSPNTDGIH IARSRRVHVT DCTIKTGDDC 240 ISIEDGTENL HVKNILCGPG HGISIGSLGD HGSEAYVINV TVDSVTLHGT TNGARIKTWQ 300 GGRGYAKNII FRNTIMDS |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 2.0e-66 | 13 | 317 | 307 | + polygalacturonase/glycoside hydrolase family protein |
pfam00295 | Glyco_hydro_28 | 4.0e-67 | 69 | 316 | 248 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN03003 | PLN03003 | 6.0e-68 | 39 | 318 | 281 | + Probable polygalacturonase At3g15720 |
PLN02218 | PLN02218 | 2.0e-88 | 26 | 318 | 297 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 8.0e-90 | 31 | 318 | 288 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 1 | 318 | 1 | 329 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 1 | 318 | 1 | 329 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAZ03178.1 | 0 | 1 | 318 | 1 | 329 | hypothetical protein OsI_25331 [Oryza sativa Indica Group] |
GenBank | EAZ39077.1 | 0 | 1 | 318 | 1 | 329 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 1 | 318 | 1 | 329 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 136 | 316 | 113 | 301 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000006 | 134 | 313 | 72 | 248 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000006 | 134 | 313 | 72 | 248 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000006 | 134 | 313 | 72 | 248 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000006 | 134 | 313 | 72 | 248 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |