y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00054428m |
Family | PL1 |
Protein Properties | Length: 345 Molecular Weight: 36769.5 Isoelectric Point: 6.8864 |
Chromosome | Chromosome/Scaffold: 0213564 Start: 329 End: 1460 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 137 | 337 | 0 |
WIVFAADMTIRLSQELLVNSYKTIDGRGARVHIGAGGACITLQYVSNVIVHNVHVHDCVPAGDADVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALW RCADGLVDAIMGSTAITVSNSYFAHHDEVMLLGASDAYLPDSAMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEMYAIGGSASPTINSQGNRYI A |
Full Sequence |
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Protein Sequence Length: 345 Download |
MAGAPKSTGI ALFPLLLLAA AAAASALPLL NSSVPDPAAV VADFHSKVAS SRRRMQEAGG 60 GGGCMTGNPI DDCWRCAGTD WRQDRQRLAD CGIGFGRNAL GGKGGPLYVV TDSSDRDPVN 120 PAPGTLRHAA IQEGPLWIVF AADMTIRLSQ ELLVNSYKTI DGRGARVHIG AGGACITLQY 180 VSNVIVHNVH VHDCVPAGDA DVRSSPTHYG WRTRSDGDGI SLFGARDVWV DHCALWRCAD 240 GLVDAIMGST AITVSNSYFA HHDEVMLLGA SDAYLPDSAM QVTIAFNRFG PGLVQRMPRC 300 RRGYFHIVNN DYTSWEMYAI GGSASPTINS QGNRYIAPTD PNAKE 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-22 | 101 | 333 | 251 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 150 | 335 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-66 | 143 | 338 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN31780.1 | 0 | 1 | 345 | 1 | 349 | unknown [Zea mays] |
GenBank | EEC67092.1 | 0 | 1 | 345 | 1 | 350 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
RefSeq | NP_001064761.1 | 0 | 1 | 345 | 41 | 390 | Os10g0457200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147972.1 | 0 | 1 | 345 | 1 | 349 | pectate lyase 12 [Zea mays] |
RefSeq | XP_002464529.1 | 0 | 1 | 345 | 1 | 347 | hypothetical protein SORBIDRAFT_01g020180 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 68 | 345 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 68 | 345 | 2 | 278 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 99 | 336 | 21 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 152 | 335 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000000008 | 159 | 312 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |