| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00054440m |
| Family | CBM53 |
| Protein Properties | Length: 1034 Molecular Weight: 118346 Isoelectric Point: 5.3338 |
| Chromosome | Chromosome/Scaffold: 021195 Start: 262 End: 7226 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 151 | 234 | 5.2e-32 |
| SMINLYLNRSMSALASEPDVLIKGAFNGWRWKSFTENLHKSELRGDWWCCKLYIPKQAYRLDFVFFNGGTVYENNNHNDFFLEI | |||
| CBM53 | 487 | 575 | 1.8e-36 |
| GTTVDVFYNPSNTVLNGKPEVWFRGSFNRWTHPSGPLPPQKMVKAENGSHLRATVRVPLDAYMMDFVFSESEDGGIYDNRNGMDYHIPV | |||
| CBM53 | 325 | 415 | 1.5e-36 |
| GDRVRLYYNRSSRPLMHNNEIWMHGGYNNWIDGLSISERLVKSHEKDGDWWYAEVTLPERALVLDWVFADGPPGNARNYDNNGRQDFHAIV | |||
| GT5 | 586 | 1028 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVMDLHYQQSFTWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDE SRFGFFCHSALEFLLQKGSSPDIIHCHDWSSAPVAWLYKEQYALNGLGNGRVVFTIHNLEFGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYFKF HGIRNGIDPDIWDPYTDNFIPVHYTSENVVEGKSAAKKALQQMLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDPRIQGDFTN LASRLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDDDKYRAQAQGLEPNGFSFEGADSSSVD YALDRAISTFYDARDWFNSLCKRVMEQDWSWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1034 Download |
| MPMDDESIDR KLDEYRGKIS ALVSSKPEPS TSASVHGQDK PLVGTHEQEK SITGFEEHDS 60 SIVDEPRKGR PFAEAIVGYP VKHADEEPPV SEDDELRIIK DQEQYEPDIQ APVEDDVDPE 120 VLKRRLQELA DENYSVGNKC FVFPEVVKAD SMINLYLNRS MSALASEPDV LIKGAFNGWR 180 WKSFTENLHK SELRGDWWCC KLYIPKQAYR LDFVFFNGGT VYENNNHNDF FLEIESDIDE 240 HSFEDFLVEE KQKELERLAA EEAERKRQAE EERRREEERA AMEADRAQAK SEVEMKKEKL 300 HQMLSSASRY ADYLWYIEPN TYKGGDRVRL YYNRSSRPLM HNNEIWMHGG YNNWIDGLSI 360 SERLVKSHEK DGDWWYAEVT LPERALVLDW VFADGPPGNA RNYDNNGRQD FHAIVPNNIP 420 EDMFWVEEEH RIFRRLQQER REREHADRLK AERSAKMKAE MKEKTMRAFL ISQKHIVYTE 480 PLEVRAGTTV DVFYNPSNTV LNGKPEVWFR GSFNRWTHPS GPLPPQKMVK AENGSHLRAT 540 VRVPLDAYMM DFVFSESEDG GIYDNRNGMD YHIPVSDSVA KEPPMHIVHI AVEMAPIAKV 600 GGLGDVVTSL SRAVQDLGHN VEVILPKYDC LNLSNVMDLH YQQSFTWGGT EIKVWFGKVE 660 DLPVYFLEPQ NGMFWVGCVY GKNDESRFGF FCHSALEFLL QKGSSPDIIH CHDWSSAPVA 720 WLYKEQYALN GLGNGRVVFT IHNLEFGAHH IGKAMAHCDK ATTVSDTYSK EVAGHGAIAP 780 HYFKFHGIRN GIDPDIWDPY TDNFIPVHYT SENVVEGKSA AKKALQQMLG LQQTDTPIVG 840 IISRLTVQKG IHLIKHAIYR TLERNGQVVL LGSAPDPRIQ GDFTNLASRL HGEYHGRVKL 900 CLTYDEPLSH LIYAGADFIL VPSIFEPCGL TQLIAMRYGS IPIVRKTGGL YDTVFDVDDD 960 KYRAQAQGLE PNGFSFEGAD SSSVDYALDR AISTFYDARD WFNSLCKRVM EQDWSWNRPA 1020 LDYMELYHSA RKN* 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 2.0e-20 | 110 | 419 | 318 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 1.0e-22 | 292 | 582 | 319 | + synthase/transferase | ||
| PRK00654 | glgA | 3.0e-164 | 585 | 1033 | 487 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-172 | 586 | 1029 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 120 | 1032 | 914 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86847.1 | 0 | 3 | 1033 | 157 | 1191 | starch synthase IIIb precursor [Sorghum bicolor] |
| GenBank | ACY56216.1 | 0 | 3 | 1033 | 160 | 1216 | soluble starch synthase III-1 [Oryza sativa Japonica Group] |
| GenBank | ACY56219.1 | 0 | 3 | 1033 | 160 | 1216 | soluble starch synthase III-1 [Oryza sativa Indica Group] |
| RefSeq | NP_001106015.1 | 0 | 3 | 1033 | 157 | 1191 | starch synthase IIIb-1 precursor [Zea mays] |
| RefSeq | NP_001106016.1 | 0 | 1 | 1033 | 155 | 1188 | starch synthase IIIb-2 precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 585 | 1028 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 585 | 1028 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 585 | 1028 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 585 | 1028 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 585 | 1028 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 565 | 469 | 1032 | 0 |
| HO778003 | 741 | 80 | 819 | 0 |
| GT033751 | 342 | 636 | 977 | 0 |
| GO840562 | 322 | 469 | 790 | 0 |
| HO794758 | 133 | 292 | 422 | 0.63 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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