CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00054484m
FamilyGH18
Protein PropertiesLength: 431 Molecular Weight: 48437.4 Isoelectric Point: 9.1046
ChromosomeChromosome/Scaffold: 021858 Start: 3213 End: 7245
DescriptionGlycosyl hydrolase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH181064217e-30
  VLAYVTPWNSKGYDMAKLFSAKLTHISPVWYDLKSDRNMLVLEGEHNFDATWVSELQGNGSLVVPRVVLEAFPAVILLEKMQKAKAIDLIVNECRDKGYD
  GIVLESWSRWAVYGVLDDPELRYMALQFVKQLGEALHSISSKSSNRHLELIYVIPAPRMQELSNQDFGPEDLLQLADSLDGFSLMTYDFSGPQNPGPSAP
  LKWVQHSLTTLLSAKGSSPSRNHSRMIFLGINFYGNDFLLSRGSGGGAITGRDFVHLLEKYKPSLKWDEKSLEHFFIYSHEGVRHAVFFPTLMSLSVRLD
  EARNWGTGLSIWEIGQ
Full Sequence
Protein Sequence     Length: 431     Download
MPPRRRDRRR PRDPSPPPSD ARAPPSASGI RLTRLAPAVV LVLVLAALGF SGRLSRSPPH    60
PQTLQTTARS VYERGLVKRD ISSWEILTEH TRVSEKRSQH QFPNPVLAYV TPWNSKGYDM    120
AKLFSAKLTH ISPVWYDLKS DRNMLVLEGE HNFDATWVSE LQGNGSLVVP RVVLEAFPAV    180
ILLEKMQKAK AIDLIVNECR DKGYDGIVLE SWSRWAVYGV LDDPELRYMA LQFVKQLGEA    240
LHSISSKSSN RHLELIYVIP APRMQELSNQ DFGPEDLLQL ADSLDGFSLM TYDFSGPQNP    300
GPSAPLKWVQ HSLTTLLSAK GSSPSRNHSR MIFLGINFYG NDFLLSRGSG GGAITGRDFV    360
HLLEKYKPSL KWDEKSLEHF FIYSHEGVRH AVFFPTLMSL SVRLDEARNW GTGLSIWEIG    420
QGLDFFFDVL * 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00704Glyco_hydro_185.0e-9188421254+
COG3858COG38588.0e-18181430263+
cd02874GH18_CFLE_spore_hydrolase9.0e-23106430341+
smart00636Glyco_182.0e-28106421361+
cd02876GH18_SI-CLP2.0e-150102430335+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACG34172.101543015430hydrolase, hydrolyzing O-glycosyl compounds [Zea mays]
GenBankEEC71106.105743061435hypothetical protein OsI_02892 [Oryza sativa Indica Group]
GenBankEEE55003.105743061435hypothetical protein OsJ_02637 [Oryza sativa Japonica Group]
RefSeqNP_001130247.101543015430hypothetical protein LOC100191341 [Zea mays]
RefSeqXP_002455966.101543015430hypothetical protein SORBIDRAFT_03g028160 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bxw_A06543039393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3bxw_B06543039393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3cz8_B0.0002289410180298A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis
PDB3cz8_A0.0002289410180298A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis
Transmembrane Domains
StartEnd
3254
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
JG9068852601594180
JG8005012441223650
FL8312512252074310
GR8810172581494060
JG9472602132194310
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_013_00129.1
Arabidopsis lyrata352729
Arabidopsis thalianaAT4G01040.1
Brachypodium distachyonBradi2g43770.1
Brassica rapaBra000939
Carica papayaevm.model.supercontig_273.9
Capsella rubellaCarubv10001405m
Chlamydomonas reinhardtiiCre03.g200650.t1.1
Citrus clementinaCiclev10020231m
Citrus sinensisorange1.1g014108morange1.1g014001m
Cucumis sativusCucsa.259130.2Cucsa.259130.1
Eucalyptus grandisEucgr.E00067.1
Fragaria vescamrna19212.1-v1.0-hybrid
Glycine maxGlyma03g41760.2Glyma19g44401.1Glyma03g41760.1
Gossypium raimondiiGorai.008G124300.1
Linum usitatissimumLus10005946Lus10029447
Malus domesticaMDP0000223446MDP0000126058
Manihot esculentacassava4.1_001521m
Medicago truncatulaMedtr5g025480.1
Mimulus guttatusmgv1a010899m
Oryza sativaLOC_Os01g43220.1
Panicum virgatumPavirv00033212m
Physcomitrella patensPp1s162_65V6.1
Phaseolus vulgarisPhvul.006G111900.1
Picea abiesMA_557825g0010
Populus trichocarpaPotri.014G096700.1Potri.014G096700.2Potri.014G096700.4Potri.014G096700.3
Prunus persicappa006146m
Ricinus communis29742.m001446
Setaria italicaSi002099m
Selaginella moellendorffii249085240
Sorghum bicolorSb03g028160.1
Thellungiella halophilaThhalv10028671m
Vitis viniferaGSVIVT01027076001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny