| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00054581m |
| Family | CE8 |
| Protein Properties | Length: 335 Molecular Weight: 35166.1 Isoelectric Point: 8.7554 |
| Chromosome | Chromosome/Scaffold: 0219816 Start: 1025 End: 2029 |
| Description | pectin methylesterase 2 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 254 | 334 | 1.1e-26 |
| AVVAQDGSGNYTTVSAAVAAAPTNSKRRYVIYIKAGAYMENVEVGKKHVNLMFVGDGIGKTVIKASRNVVDGSTTFRSATV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 335 Download |
| MPPLPKRPGP LLVLLVVAFA AATAAASSDA AGTVPFYPTA EAAAAAHCDG TLYPDVCLST 60 LADIPDLHKK TLPDVICAAV NRTEDVVTAT ASNCSSYLRE RSLSARDRLA ISDCLELLST 120 TMDDLQATVA DLESPAARDS GSSASSSAAG ARRVTMDHVM TVLSAAITNQ YTCLDGFAYQ 180 DGGRVRRYIE PTLHHVSRMV SNSLAMAKKL PGASPAPRQP FMGYGQMVKG FPRWVRPGDR 240 RLLQAPASGV AADAVVAQDG SGNYTTVSAA VAAAPTNSKR RYVIYIKAGA YMENVEVGKK 300 HVNLMFVGDG IGKTVIKASR NVVDGSTTFR SATVG |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 2.0e-40 | 78 | 333 | 268 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 2.0e-41 | 48 | 333 | 298 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 9.0e-45 | 48 | 334 | 296 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02933 | PLN02933 | 1.0e-49 | 70 | 335 | 276 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02313 | PLN02313 | 9.0e-52 | 38 | 335 | 316 | + Pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACQ85264.1 | 0 | 44 | 334 | 55 | 334 | pectin methylesterase [Musa acuminata AAA Group] |
| GenBank | EEC70505.1 | 0 | 33 | 334 | 34 | 335 | hypothetical protein OsI_01594 [Oryza sativa Indica Group] |
| GenBank | EEE54425.1 | 0 | 33 | 334 | 34 | 354 | hypothetical protein OsJ_01485 [Oryza sativa Japonica Group] |
| RefSeq | NP_001146685.1 | 0 | 1 | 334 | 1 | 333 | hypothetical protein LOC100280285 [Zea mays] |
| RefSeq | XP_002455538.1 | 0 | 1 | 334 | 1 | 346 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 2e-26 | 250 | 334 | 1 | 85 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 3e-26 | 247 | 334 | 2 | 89 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
