Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00054608m |
Family | GT47 |
Protein Properties | Length: 308 Molecular Weight: 35136.4 Isoelectric Point: 5.3519 |
Chromosome | Chromosome/Scaffold: 0216098 Start: 1 End: 1232 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 18 | 294 | 0 |
RLKVFVYDLPSKHNKRIVTKDPRCLNHMFAAEIFMHHFLLSSAVRTLNPEEADWFYVPVYTTCDLTPAGLPLPFKSPRMMRSAIQFISNKWPFWNKTDGA DHFFVVPHDFGACFHYQEEKAIERGILPMLRRATLEGSIIIPPYAPPQKMQAHLIPLDTPRSIFVYFRGLFYDNGNDPEGGYYARFENFKNNPLFDISTD HPSTYYEDMQRAVLCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEEDVPKLDSILTSI |
Full Sequence |
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Protein Sequence Length: 308 Download |
HIPAGSAGDV LEDNPVGRLK VFVYDLPSKH NKRIVTKDPR CLNHMFAAEI FMHHFLLSSA 60 VRTLNPEEAD WFYVPVYTTC DLTPAGLPLP FKSPRMMRSA IQFISNKWPF WNKTDGADHF 120 FVVPHDFGAC FHYQEEKAIE RGILPMLRRA TLEGSIIIPP YAPPQKMQAH LIPLDTPRSI 180 FVYFRGLFYD NGNDPEGGYY ARFENFKNNP LFDISTDHPS TYYEDMQRAV LCLCPLGWAP 240 WSPRLVEAVV FGCIPVIIAD DIVLPFADAI PWEEIGVFVD EEDVPKLDSI LTSIPIEDIL 300 RKQRLLAN |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-78 | 18 | 294 | 294 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD26319.1 | 0 | 4 | 308 | 52 | 375 | putative pectin-glucuronyltransferase [Oryza sativa Japonica Group] |
GenBank | EAZ23244.1 | 0 | 4 | 308 | 52 | 375 | hypothetical protein OsJ_06939 [Oryza sativa Japonica Group] |
RefSeq | NP_001052673.1 | 0 | 4 | 308 | 39 | 362 | Os04g0398600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002446363.1 | 0 | 4 | 308 | 49 | 372 | hypothetical protein SORBIDRAFT_06g014730 [Sorghum bicolor] |
RefSeq | XP_002452172.1 | 0 | 4 | 308 | 51 | 374 | hypothetical protein SORBIDRAFT_04g021180 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO871901 | 312 | 13 | 305 | 0 |
GO872051 | 299 | 29 | 308 | 0 |
EX131890 | 308 | 20 | 308 | 0 |
GO868908 | 297 | 31 | 308 | 0 |
GO868810 | 297 | 31 | 308 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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