| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00054696m |
| Family | CE8 |
| Protein Properties | Length: 475 Molecular Weight: 50836.2 Isoelectric Point: 6.423 |
| Chromosome | Chromosome/Scaffold: 0217719 Start: 134 End: 2102 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 167 | 467 | 0 |
| ATVCAAGCDYRTVREAVAAAPDYGEGPFVVRVKEGVYRETVSVPWEKTNVVLVGDGMGRTVITGDLNADTPGVSTFNTATVGVLADGFMARDLTISNTAG PDAHQAVAFRSTGDRTVLDGVELLGHQDTLYAHAMRHFYTRCRVAGTVDFVFGNSAAVLHATALIVLPRQLRPDKGENDAVTAQGRTDPAQPTGIVLSVC SVNGSDEYMALYRRKPDAHRVYLGRPWKEYSRTVYLRCTLAEIVQPQGWMPWSGDFALDTLYYGEFGSAGPGAAAGRRVAWSSQVPEDHVDAYSVANFIQ G | |||
| Full Sequence |
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| Protein Sequence Length: 475 Download |
| SGAAPDASAS DLLGATLTAL RARIPPAVST AKSVLAASSN VNLTNAATNC LTLLSLSSRR 60 LAPSPSPPLL SASTALLHLY DCWSAYKYVN FSRAISDAMA YLNDTIAVNS NYISMLAARQ 120 RYGDETSLWR PPQTERDGYW PPAAVASKEA ERDVDALGVP RGLPANATVC AAGCDYRTVR 180 EAVAAAPDYG EGPFVVRVKE GVYRETVSVP WEKTNVVLVG DGMGRTVITG DLNADTPGVS 240 TFNTATVGVL ADGFMARDLT ISNTAGPDAH QAVAFRSTGD RTVLDGVELL GHQDTLYAHA 300 MRHFYTRCRV AGTVDFVFGN SAAVLHATAL IVLPRQLRPD KGENDAVTAQ GRTDPAQPTG 360 IVLSVCSVNG SDEYMALYRR KPDAHRVYLG RPWKEYSRTV YLRCTLAEIV QPQGWMPWSG 420 DFALDTLYYG EFGSAGPGAA AGRRVAWSSQ VPEDHVDAYS VANFIQGHEW IPKA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02713 | PLN02713 | 3.0e-92 | 175 | 473 | 308 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 3.0e-92 | 162 | 472 | 319 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-94 | 160 | 471 | 316 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-131 | 166 | 467 | 306 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 5 | 473 | 480 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY76707.1 | 0 | 1 | 473 | 64 | 538 | hypothetical protein OsI_04662 [Oryza sativa Indica Group] |
| RefSeq | NP_001044992.1 | 0 | 1 | 473 | 64 | 538 | Os01g0880300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_196538.1 | 0 | 5 | 470 | 70 | 546 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002281640.1 | 0 | 5 | 472 | 76 | 552 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002458861.1 | 0 | 1 | 473 | 66 | 505 | hypothetical protein SORBIDRAFT_03g041680 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 166 | 471 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 163 | 471 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 1e-21 | 166 | 443 | 5 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-21 | 166 | 443 | 5 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 4e-21 | 166 | 453 | 5 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EC888853 | 289 | 187 | 475 | 0 |
| FL694762 | 236 | 187 | 422 | 0 |
| EE289607 | 259 | 187 | 445 | 0 |
| EC899075 | 246 | 187 | 432 | 0 |
| EE028687 | 235 | 187 | 421 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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