CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00054858m
FamilyAA1
Protein PropertiesLength: 388 Molecular Weight: 42681.7 Isoelectric Point: 7.6744
ChromosomeChromosome/Scaffold: 021595 Start: 4026 End: 6965
Descriptionlaccase 12
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
AA11013621.2e-34
  PCVGEPPVAPEMPDQHDTTLSYYFHGNLTSLNHTVVPSRADESMLITLGLGSVCRRRGQSSCKRSGSKEAIIVAAMNNISFQLPATTMPLLEAHYHHTGD
  LDTLLQELPSRPPMAFNFTDRALIPRGPKEGRLEPTSRGSLARRFRHGTVVDIVFQGPAVMQSDSNAMHLHGHDMFGVGNYDAERDVAKYNLVNPPVRNP
  VLVPRIGWAVVRFVADNPGVWYMRCHYEFHLSMGMAAIFIVEDGPTESTSLPAPPSEFLTCN
Full Sequence
Protein Sequence     Length: 388     Download
MICRNRAKKD GFVLDVEPGK TYLLRVINAA LFSEYYLKIV GHKFTTVDAL VVADAPPAGR    60
YYITALAKQS PKPDPQVPKF VTRGTTTLCS SHEEVGGEAH PCVGEPPVAP EMPDQHDTTL    120
SYYFHGNLTS LNHTVVPSRA DESMLITLGL GSVCRRRGQS SCKRSGSKEA IIVAAMNNIS    180
FQLPATTMPL LEAHYHHTGD LDTLLQELPS RPPMAFNFTD RALIPRGPKE GRLEPTSRGS    240
LARRFRHGTV VDIVFQGPAV MQSDSNAMHL HGHDMFGVGN YDAERDVAKY NLVNPPVRNP    300
VLVPRIGWAV VRFVADNPGV WYMRCHYEFH LSMGMAAIFI VEDGPTESTS LPAPPSEFLT    360
CNHAHRLVPN ELYLKNTNTT GARVNEA* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
PLN02604PLN026042.0e-19175353187+
pfam07731Cu-oxidase_21.0e-19244345107+
TIGR03388ascorbase7.0e-24175361199+
TIGR03389laccase5.0e-675361389+
Gene Ontology
GO TermDescription
GO:0005507copper ion binding
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankEEE50804.105358386766hypothetical protein OsJ_31178 [Oryza sativa Japonica Group]
GenBankEEE50804.15e-379152223386hypothetical protein OsJ_31178 [Oryza sativa Japonica Group]
RefSeqNP_001064399.109358223599Os10g0346300 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001146681.109344223585hypothetical protein LOC100280281 [Zea mays]
RefSeqXP_002449982.109344215581hypothetical protein SORBIDRAFT_05g026630 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1asq_B2e-2312339204521A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome
PDB1asq_A2e-2312339204521A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome
PDB1asp_B2e-2312339204521A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome
PDB1asp_A2e-2312339204521A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome
PDB1aso_B2e-2312339204521A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
JK5930192501043460
CA1462542381043310
FL7602022191603620
EG387833284613360
HO3039632031703680
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_009_00804.1Aquca_009_00807.1Aquca_009_00807.2
Arabidopsis lyrata478237472269486975
Arabidopsis thalianaAT3G09220.1AT5G01040.1AT5G01050.1
Brachypodium distachyonBradi4g39330.1Bradi2g55050.1Bradi2g55060.1Bradi4g11827.1Bradi4g11850.1
Bradi3g45190.1Bradi1g10567.1Bradi3g22317.1Bradi4g11780.1Bradi4g11770.1
Bradi4g11840.1Bradi3g02290.1Bradi3g02300.1
Brassica rapaBra029753Bra028885Bra005699
Capsella rubellaCarubv10016347mCarubv10000548m
Glycine maxGlyma01g26750.1Glyma03g15800.5Glyma03g15805.1Glyma01g26750.2Glyma07g17170.1
Glyma18g41886.1Glyma18g41860.1Glyma07g17150.1Glyma18g41870.1
Malus domesticaMDP0000291183
Manihot esculentacassava4.1_006971m
Oryza sativaLOC_Os01g63200.1LOC_Os01g63190.1LOC_Os11g42200.1LOC_Os11g42220.1LOC_Os11g16260.1
LOC_Os10g20610.1
Panicum virgatumPavirv00040765mPavirv00049024mPavirv00038281mPavirv00007769mPavirv00063349m
Pavirv00062920mPavirv00053056mPavirv00047982mPavirv00069158mPavirv00051794m
Pavirv00019186mPavirv00057102mPavirv00039741mPavirv00033330mPavirv00023383m
Pavirv00050058mPavirv00043455mPavirv00033589mPavirv00032842mPavirv00018047m
Pavirv00032841mPavirv00054602mPavirv00028624mPavirv00051105mPavirv00056353m
Pavirv00054859m
Phaseolus vulgarisPhvul.010G005900.1Phvul.008G112100.1
Setaria italicaSi021601mSi020688mSi027309mSi021573mSi021628m
Si004353mSi000613mSi026121mSi028303mSi027928m
Si009653mSi026113mSi028115mSi027394mSi026118m
Si026123mSi026150mSi026109mSi028248mSi027660m
Si026140mSi027267mSi026136mSi027586mSi026159m
Si026153mSi026117mSi028198mSi026161mSi026162m
Si008101mSi026299mSi026376mSi026137mSi024846m
Si001570mSi001277mSi001174mSi027990m.20.264Si027990m.20.264
Si027990m.273.533Si027990m.273.533
Sorghum bicolorSb08g011530.1Sb03g039960.1Sb03g039980.1Sb03g039970.1Sb05g026630.1
Sb03g009410.1Sb05g025570.1Sb02g000300.1
Thellungiella halophilaThhalv10020392mThhalv10020388mThhalv10013097mThhalv10013058mThhalv10015329m
Zea maysAC234190.1_FGT002
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)