Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00054858m |
Family | AA1 |
Protein Properties | Length: 388 Molecular Weight: 42681.7 Isoelectric Point: 7.6744 |
Chromosome | Chromosome/Scaffold: 021595 Start: 4026 End: 6965 |
Description | laccase 12 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 101 | 362 | 1.2e-34 |
PCVGEPPVAPEMPDQHDTTLSYYFHGNLTSLNHTVVPSRADESMLITLGLGSVCRRRGQSSCKRSGSKEAIIVAAMNNISFQLPATTMPLLEAHYHHTGD LDTLLQELPSRPPMAFNFTDRALIPRGPKEGRLEPTSRGSLARRFRHGTVVDIVFQGPAVMQSDSNAMHLHGHDMFGVGNYDAERDVAKYNLVNPPVRNP VLVPRIGWAVVRFVADNPGVWYMRCHYEFHLSMGMAAIFIVEDGPTESTSLPAPPSEFLTCN |
Full Sequence |
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Protein Sequence Length: 388 Download |
MICRNRAKKD GFVLDVEPGK TYLLRVINAA LFSEYYLKIV GHKFTTVDAL VVADAPPAGR 60 YYITALAKQS PKPDPQVPKF VTRGTTTLCS SHEEVGGEAH PCVGEPPVAP EMPDQHDTTL 120 SYYFHGNLTS LNHTVVPSRA DESMLITLGL GSVCRRRGQS SCKRSGSKEA IIVAAMNNIS 180 FQLPATTMPL LEAHYHHTGD LDTLLQELPS RPPMAFNFTD RALIPRGPKE GRLEPTSRGS 240 LARRFRHGTV VDIVFQGPAV MQSDSNAMHL HGHDMFGVGN YDAERDVAKY NLVNPPVRNP 300 VLVPRIGWAV VRFVADNPGV WYMRCHYEFH LSMGMAAIFI VEDGPTESTS LPAPPSEFLT 360 CNHAHRLVPN ELYLKNTNTT GARVNEA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02604 | PLN02604 | 2.0e-19 | 175 | 353 | 187 | + oxidoreductase | ||
pfam07731 | Cu-oxidase_2 | 1.0e-19 | 244 | 345 | 107 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
TIGR03388 | ascorbase | 7.0e-24 | 175 | 361 | 199 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
TIGR03389 | laccase | 5.0e-67 | 5 | 361 | 389 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE50804.1 | 0 | 5 | 358 | 386 | 766 | hypothetical protein OsJ_31178 [Oryza sativa Japonica Group] |
GenBank | EEE50804.1 | 5e-37 | 9 | 152 | 223 | 386 | hypothetical protein OsJ_31178 [Oryza sativa Japonica Group] |
RefSeq | NP_001064399.1 | 0 | 9 | 358 | 223 | 599 | Os10g0346300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146681.1 | 0 | 9 | 344 | 223 | 585 | hypothetical protein LOC100280281 [Zea mays] |
RefSeq | XP_002449982.1 | 0 | 9 | 344 | 215 | 581 | hypothetical protein SORBIDRAFT_05g026630 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 2e-23 | 12 | 339 | 204 | 521 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1asq_A | 2e-23 | 12 | 339 | 204 | 521 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1asp_B | 2e-23 | 12 | 339 | 204 | 521 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1asp_A | 2e-23 | 12 | 339 | 204 | 521 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aso_B | 2e-23 | 12 | 339 | 204 | 521 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JK593019 | 250 | 104 | 346 | 0 |
CA146254 | 238 | 104 | 331 | 0 |
FL760202 | 219 | 160 | 362 | 0 |
EG387833 | 284 | 61 | 336 | 0 |
HO303963 | 203 | 170 | 368 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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