Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00054923m |
Family | GH28 |
Protein Properties | Length: 343 Molecular Weight: 37988 Isoelectric Point: 8.8597 |
Chromosome | Chromosome/Scaffold: 021861 Start: 508 End: 2642 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 15 | 304 | 0 |
GPRFGSLIHGQNLRDVVITGHNGSINGQGEVWWMKHRRRMLNNTRPPLVQLMWSKDIIVANITLRNSPFWHFHPYDCTNITVSNVTILSPVSGAPNTDGI DPDSCQDVLIENCYISVGDDAIAVKSGWDQYGIAYGRPSSNISIRNVTARSLVSAGISIGSEMSGGVANVTVENVRIWESRRGVRIKTATGRGGYIRNIS YRNITFDNVRAGIVIKVDYNEHADDGYDRNAFPDITSISFKEIHGLGVRVPVRAHGSDVIPIKDISFQDMSVGISYKKKHIFQCSYVQGR |
Full Sequence |
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Protein Sequence Length: 343 Download |
MPALPSYGYG RERKGPRFGS LIHGQNLRDV VITGHNGSIN GQGEVWWMKH RRRMLNNTRP 60 PLVQLMWSKD IIVANITLRN SPFWHFHPYD CTNITVSNVT ILSPVSGAPN TDGIDPDSCQ 120 DVLIENCYIS VGDDAIAVKS GWDQYGIAYG RPSSNISIRN VTARSLVSAG ISIGSEMSGG 180 VANVTVENVR IWESRRGVRI KTATGRGGYI RNISYRNITF DNVRAGIVIK VDYNEHADDG 240 YDRNAFPDIT SISFKEIHGL GVRVPVRAHG SDVIPIKDIS FQDMSVGISY KKKHIFQCSY 300 VQGRVIGSVF PKPCENLDVY NEQGQLVKRA VSLNSTELDY DI* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 6.0e-27 | 34 | 259 | 235 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 2.0e-27 | 37 | 314 | 287 | + Probable polygalacturonase |
PLN03003 | PLN03003 | 1.0e-31 | 26 | 286 | 268 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 2.0e-39 | 22 | 301 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 5.0e-45 | 2 | 276 | 298 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY87758.1 | 0 | 1 | 330 | 177 | 506 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
GenBank | EAZ24830.1 | 0 | 1 | 331 | 121 | 451 | hypothetical protein OsJ_08610 [Oryza sativa Japonica Group] |
RefSeq | NP_001140630.1 | 0 | 1 | 342 | 154 | 495 | hypothetical protein LOC100272705 [Zea mays] |
RefSeq | NP_173351.1 | 0 | 1 | 342 | 165 | 506 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002452925.1 | 0 | 1 | 342 | 159 | 500 | hypothetical protein SORBIDRAFT_04g035020 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-34 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-34 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-34 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-34 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-22 | 37 | 288 | 117 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL941259 | 259 | 3 | 261 | 0 |
JG891255 | 257 | 86 | 342 | 0 |
JG868352 | 258 | 86 | 343 | 0 |
HO272590 | 252 | 64 | 315 | 0 |
FN769574 | 317 | 1 | 317 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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