| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00054947m |
| Family | AA3 |
| Protein Properties | Length: 352 Molecular Weight: 38316 Isoelectric Point: 8.9655 |
| Chromosome | Chromosome/Scaffold: 0216361 Start: 1018 End: 2116 |
| Description | fatty alcohol oxidase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA3 | 2 | 316 | 3.9e-26 |
| ILTGCKAERFVFGKNSGRGRGKKCVGLVATCASDGGVAKKLRIEAKVSIAACGALMTPPLLRNSGLKNRHIGRNLHLHPVSMAWGYFPESRQDPELAGRC YEGGIITSMHRVTERTIIETPALGPGAFAAMVPWESGRDMKERMRRYSRTAHAFALVRDRGAGFVDGEGRVRFTPSREDVDELRNGLRRALRILVAAGAA EVGTHRSDGQRLRCKGLRDEDLEAFLDEVTVDKGPMHSRADKWALHCSAHQMGSCRMGSSPRDGAVDGRGESWEAEGLYVCDGSLLPTAVGVNPMITIQS TAYCLSKGIAETLAQ | |||
| Full Sequence |
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| Protein Sequence Length: 352 Download |
| VILTGCKAER FVFGKNSGRG RGKKCVGLVA TCASDGGVAK KLRIEAKVSI AACGALMTPP 60 LLRNSGLKNR HIGRNLHLHP VSMAWGYFPE SRQDPELAGR CYEGGIITSM HRVTERTIIE 120 TPALGPGAFA AMVPWESGRD MKERMRRYSR TAHAFALVRD RGAGFVDGEG RVRFTPSRED 180 VDELRNGLRR ALRILVAAGA AEVGTHRSDG QRLRCKGLRD EDLEAFLDEV TVDKGPMHSR 240 ADKWALHCSA HQMGSCRMGS SPRDGAVDGR GESWEAEGLY VCDGSLLPTA VGVNPMITIQ 300 STAYCLSKGI AETLAQGEKQ CVRMLIECAD YTTLHLCKWF TTGGWLTQPK I* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 0.007 | 245 | 294 | 50 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 0.0002 | 209 | 299 | 95 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| COG2303 | BetA | 1.0e-16 | 1 | 299 | 332 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam05199 | GMC_oxred_C | 7.0e-22 | 171 | 306 | 136 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| pfam00732 | GMC_oxred_N | 7.0e-23 | 1 | 81 | 83 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF88407.1 | 0 | 1 | 318 | 142 | 462 | unknown [Zea mays] |
| GenBank | ACR36076.1 | 0 | 1 | 318 | 220 | 540 | unknown [Zea mays] |
| GenBank | ACR36691.1 | 0 | 1 | 318 | 459 | 779 | unknown [Zea mays] |
| RefSeq | NP_001142399.1 | 0 | 1 | 318 | 351 | 671 | hypothetical protein LOC100274574 [Zea mays] |
| RefSeq | XP_002464494.1 | 0 | 1 | 320 | 267 | 587 | hypothetical protein SORBIDRAFT_01g019460 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2gew_A | 0.0002 | 224 | 303 | 409 | 489 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 1n4w_A | 0.0002 | 224 | 303 | 409 | 489 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 1n4v_A | 0.0002 | 224 | 303 | 409 | 489 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 1n4u_A | 0.0002 | 224 | 303 | 409 | 489 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 1n1p_A | 0.0002 | 224 | 303 | 409 | 489 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FE621368 | 257 | 8 | 264 | 0 |
| DV856521 | 284 | 37 | 320 | 0 |
| CT860754 | 303 | 2 | 302 | 0 |
| EG400359 | 281 | 26 | 306 | 0 |
| CK205758 | 299 | 23 | 320 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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