| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00054954m |
| Family | GH47 |
| Protein Properties | Length: 369 Molecular Weight: 40970.7 Isoelectric Point: 5.8337 |
| Chromosome | Chromosome/Scaffold: 021790 Start: 1219 End: 8587 |
| Description | Glycosyl hydrolase family 47 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH47 | 51 | 365 | 0 |
| MFYHAFDGYMKYAFPLDELRPLSCQGEDSLGGYALTLIDSLDTLALLGDKEKFGAAVEWVGKNVRFDINKTVSVFETNIRILGGLLSAHLIASDYATGMR IQSYDDQLLHLAADLAQRLLPAFDTPTGIPFGSINLKYGVDENESKITSTAGGGTLTLEFGILSRLTNNTVFERVTKNSVRGIWSRRSKLNLVGAHINVF TGEWTQKDAGIGTSIDSFYEYLLKAYLLFGDEEYLYIFQEAYKAAMHHLHHDPWYVEVNMNSGATVWPLFNSLQAFWPGLQVLAGDVDPAIRTHDAFFSV WKKYGFTPEGFNLAT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 369 Download |
| MQPMRRRQRG FPLLCLSAAL LAAAALLPGA AVAEGVTPSE ARRLRDEVKD MFYHAFDGYM 60 KYAFPLDELR PLSCQGEDSL GGYALTLIDS LDTLALLGDK EKFGAAVEWV GKNVRFDINK 120 TVSVFETNIR ILGGLLSAHL IASDYATGMR IQSYDDQLLH LAADLAQRLL PAFDTPTGIP 180 FGSINLKYGV DENESKITST AGGGTLTLEF GILSRLTNNT VFERVTKNSV RGIWSRRSKL 240 NLVGAHINVF TGEWTQKDAG IGTSIDSFYE YLLKAYLLFG DEEYLYIFQE AYKAAMHHLH 300 HDPWYVEVNM NSGATVWPLF NSLQAFWPGL QVLAGDVDPA IRTHDAFFSV WKKYGFTPEG 360 FNLATSTVQ |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PTZ00470 | PTZ00470 | 2.0e-43 | 45 | 337 | 308 | + glycoside hydrolase family 47 protein; Provisional | ||
| pfam01532 | Glyco_hydro_47 | 2.0e-114 | 51 | 367 | 340 | + Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD52943.1 | 0 | 34 | 369 | 38 | 373 | putative aspartyl(D) tRNA Synthetase (89.0 kD)(drs-2C) [Oryza sativa Japonica Group] |
| GenBank | EEC71566.1 | 0 | 34 | 369 | 38 | 350 | hypothetical protein OsI_03924 [Oryza sativa Indica Group] |
| RefSeq | NP_001044401.1 | 0 | 34 | 369 | 46 | 381 | Os01g0773600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001132501.1 | 0 | 1 | 369 | 1 | 369 | hypothetical protein LOC100193961 [Zea mays] |
| RefSeq | XP_002456427.1 | 0 | 1 | 369 | 1 | 369 | hypothetical protein SORBIDRAFT_03g036080 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4ayr_A | 0 | 32 | 365 | 1 | 329 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
| PDB | 4ayq_A | 0 | 32 | 365 | 1 | 329 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
| PDB | 4ayp_A | 0 | 32 | 365 | 1 | 329 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
| PDB | 4ayo_A | 0 | 32 | 365 | 1 | 329 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
| PDB | 1nxc_A | 9.00054e-42 | 26 | 278 | 1 | 250 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
