Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00054995m |
Family | GH28 |
Protein Properties | Length: 347 Molecular Weight: 37660.2 Isoelectric Point: 4.6272 |
Chromosome | Chromosome/Scaffold: 0215504 Start: 467 End: 1868 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 11 | 298 | 0 |
QVDGVLMPPDGPDCWPPSDNRRQWVVFSNIDGMTLRGAGTIEGNGEDWWNLPCKPHRGPNGSTLRGPCDSPTLLRFFMSRNLVVEGLRVENSPEFHFRFD GCSDVRVDGLYISSPANSPNTDGIHVENTERVGIYNSRISNGDDCISIGTGSYDVDIQNITCGPGHGISIGSLGVHNSQACVANVTVRNAVIRNSDNGLR IKTWQGGMGAVSGIAFDTVAMENVRNCIIVDQYYCLDKRCMNQSTAVHVTDVSYANVRGSYDARSAPIHFACSDTVPCTNITMSEVEL |
Full Sequence |
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Protein Sequence Length: 347 Download |
MNLPLSGRVV QVDGVLMPPD GPDCWPPSDN RRQWVVFSNI DGMTLRGAGT IEGNGEDWWN 60 LPCKPHRGPN GSTLRGPCDS PTLLRFFMSR NLVVEGLRVE NSPEFHFRFD GCSDVRVDGL 120 YISSPANSPN TDGIHVENTE RVGIYNSRIS NGDDCISIGT GSYDVDIQNI TCGPGHGISI 180 GSLGVHNSQA CVANVTVRNA VIRNSDNGLR IKTWQGGMGA VSGIAFDTVA MENVRNCIIV 240 DQYYCLDKRC MNQSTAVHVT DVSYANVRGS YDARSAPIHF ACSDTVPCTN ITMSEVELLP 300 FSGELVDDPF CWSAYGTQQT PTIPPITCLQ DGLPEALLDN PDLRCR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 9.0e-61 | 10 | 298 | 292 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 5.0e-65 | 34 | 304 | 275 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-77 | 33 | 298 | 269 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-85 | 5 | 298 | 295 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-96 | 4 | 316 | 317 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS98503.1 | 0 | 7 | 346 | 146 | 504 | unknown protein [Oryza sativa Japonica Group] |
EMBL | CBI25976.1 | 0 | 7 | 345 | 37 | 375 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001055086.1 | 0 | 7 | 346 | 146 | 485 | Os05g0279900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002263668.1 | 0 | 7 | 345 | 139 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519290.1 | 0 | 7 | 339 | 142 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 6e-23 | 39 | 298 | 71 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-23 | 39 | 298 | 71 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 6e-23 | 39 | 298 | 71 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 6e-23 | 39 | 298 | 71 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 6e-23 | 39 | 298 | 71 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL745770 | 258 | 79 | 332 | 0 |
CX663441 | 276 | 61 | 336 | 0 |
DW479564 | 268 | 7 | 274 | 0 |
EY254539 | 295 | 25 | 314 | 0 |
GR169315 | 263 | 31 | 293 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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