Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00055474m |
Family | CBM43 |
Protein Properties | Length: 551 Molecular Weight: 59290.2 Isoelectric Point: 5.4334 |
Chromosome | Chromosome/Scaffold: 074254 Start: 25 End: 2113 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 362 | 442 | 3.5e-31 |
WCVANEAAGDARLLEALNYACANGADCSAIQPGAPCFEPDTMVAHASYAFNSYYQRNGRASGTCDFAGAAYVVYNEPAGTC | |||
CBM43 | 448 | 529 | 6e-32 |
WCVANEAAGDARLLEALNYACANGADCGAIQPGAACFEPNTMVAHASYAFNSYYQRNHRASGTCDFAGTASVVYHAPKYGNC | |||
GH17 | 5 | 346 | 0 |
VGVNYGRVANDLPDPASVVNLLKQNGITMVRIYDADPGVLRSFANTGIKMMVMLPNEKLADAARDRRYALDWVRSNVSAYYPATQIHALQVGNEVFDSRP DLAWSLVPAMDNLQRALADLGLADAVKVSTPVGFAAVAVSWPPSDGRFRDDVAEPVMRPMLEFLQRTGSYLTINLYPYFAYADQRSNAISRDFFLGNPNP GERDPKTGLVYYSLLDAQLDATYFAMDKLGFTSLSAYSGETGTPASGGRHGHHPKPAVGSLLTARNGDPPAASKENAQAYNNNVINRVLSGRTGTPHRPD ADMDVYIFALFNENQKGSGPDDIEQHFGLFYPNQTKVYEFDF |
Full Sequence |
---|
Protein Sequence Length: 551 Download |
MRRRVGVNYG RVANDLPDPA SVVNLLKQNG ITMVRIYDAD PGVLRSFANT GIKMMVMLPN 60 EKLADAARDR RYALDWVRSN VSAYYPATQI HALQVGNEVF DSRPDLAWSL VPAMDNLQRA 120 LADLGLADAV KVSTPVGFAA VAVSWPPSDG RFRDDVAEPV MRPMLEFLQR TGSYLTINLY 180 PYFAYADQRS NAISRDFFLG NPNPGERDPK TGLVYYSLLD AQLDATYFAM DKLGFTSLSA 240 YSGETGTPAS GGRHGHHPKP AVGSLLTARN GDPPAASKEN AQAYNNNVIN RVLSGRTGTP 300 HRPDADMDVY IFALFNENQK GSGPDDIEQH FGLFYPNQTK VYEFDFHGGA LPPPPAPAPS 360 SWCVANEAAG DARLLEALNY ACANGADCSA IQPGAPCFEP DTMVAHASYA FNSYYQRNGR 420 ASGTCDFAGA AYVVYNEPAG TCDPNTSWCV ANEAAGDARL LEALNYACAN GADCGAIQPG 480 AACFEPNTMV AHASYAFNSY YQRNHRASGT CDFAGTASVV YHAPKYGNCV LPSKTSIEQA 540 TAKSEVYAAI * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-22 | 447 | 518 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
pfam07983 | X8 | 2.0e-23 | 361 | 432 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-37 | 361 | 442 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 5.0e-38 | 447 | 530 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-89 | 5 | 346 | 342 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ40149.1 | 0 | 4 | 540 | 28 | 560 | hypothetical protein OsJ_24593 [Oryza sativa Japonica Group] |
RefSeq | NP_001151472.1 | 0 | 5 | 541 | 28 | 572 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002462968.1 | 0 | 3 | 550 | 27 | 581 | hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] |
RefSeq | XP_002462970.1 | 0 | 4 | 540 | 24 | 579 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
RefSeq | XP_002462970.1 | 0 | 345 | 534 | 464 | 660 | hypothetical protein SORBIDRAFT_02g035520 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 5 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 5 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 5 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghr_A | 0 | 5 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1aq0_B | 0 | 5 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FE635773 | 255 | 191 | 445 | 0 |
FL870780 | 264 | 23 | 286 | 0 |
FE625866 | 220 | 13 | 232 | 0 |
DV516816 | 230 | 313 | 541 | 0 |
FE635773 | 84 | 446 | 529 | 2e-37 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|