y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00055614m |
Family | GH28 |
Protein Properties | Length: 414 Molecular Weight: 43058.2 Isoelectric Point: 8.3101 |
Chromosome | Chromosome/Scaffold: 074200 Start: 1 End: 1588 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 402 | 0 |
KNACDATGTQKIVIPAGNFLTGAIGLKGPCKSSIIIRLDGNLLGTGDLSAYKTNWIEVQNVDNFAINGHGTLDGQGALVWKQNQCQKSYNCKILPNTLVL DFVKNAQIRGITLLNSKFFHMNIFSCENVVVDKVTITAPGDSPNTDGIHVGDSTNVTISGATIGTGDDCISIGPGSRAIRVQGVKCGPGHGISVGSLGRY KDEKDVEDVKVTDCTLAGTSNGLRIKSYEDSKSSPKATKFLYEGITMDNVSYPIIIDQKYCPNNICVKSGASKVAVSDVIFRNVHGTSNTPEAVTLNCAN NLPCQGVQLVNVDIKYNKSNNKTMAVCKNVAGK |
Full Sequence |
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Protein Sequence Length: 414 Download |
MAPINNNVAM TVVAAAVALL LLATNAAGAA YAAPAGGAPS VPAGPLDIVQ LGAKGDGKTD 60 STQAILKAWK NACDATGTQK IVIPAGNFLT GAIGLKGPCK SSIIIRLDGN LLGTGDLSAY 120 KTNWIEVQNV DNFAINGHGT LDGQGALVWK QNQCQKSYNC KILPNTLVLD FVKNAQIRGI 180 TLLNSKFFHM NIFSCENVVV DKVTITAPGD SPNTDGIHVG DSTNVTISGA TIGTGDDCIS 240 IGPGSRAIRV QGVKCGPGHG ISVGSLGRYK DEKDVEDVKV TDCTLAGTSN GLRIKSYEDS 300 KSSPKATKFL YEGITMDNVS YPIIIDQKYC PNNICVKSGA SKVAVSDVIF RNVHGTSNTP 360 EAVTLNCANN LPCQGVQLVN VDIKYNKSNN KTMAVCKNVA GKSIGVAKEL ACL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-79 | 50 | 413 | 370 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-82 | 52 | 398 | 354 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 3.0e-83 | 47 | 413 | 370 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-102 | 73 | 399 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-120 | 47 | 405 | 361 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD25264.1 | 0 | 40 | 413 | 49 | 422 | putative exopolygalacturonase precursor [Oryza sativa Japonica Group] |
GenBank | EEC72677.1 | 0 | 88 | 413 | 57 | 384 | hypothetical protein OsI_06235 [Oryza sativa Indica Group] |
RefSeq | NP_001046194.1 | 0 | 40 | 413 | 76 | 449 | Os02g0196700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141808.1 | 0 | 36 | 413 | 41 | 418 | hypothetical protein LOC100273946 [Zea mays] |
RefSeq | XP_002451722.1 | 0 | 37 | 413 | 86 | 462 | hypothetical protein SORBIDRAFT_04g006610 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-23 | 132 | 383 | 110 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-21 | 141 | 399 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 141 | 399 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 141 | 399 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-21 | 141 | 399 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |