y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00055805m |
Family | GH14 |
Protein Properties | Length: 369 Molecular Weight: 41006.9 Isoelectric Point: 5.5983 |
Chromosome | Chromosome/Scaffold: 074425 Start: 3341 End: 4447 |
Description | beta-amylase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 5 | 324 | 0 |
EEMDQGPGTWAYTDRSGRRNYEYVSLGCDALPVLKGRTPIQCYADFMRAFRDHFATYMGNTIVEIQVGMGPAGELRYPSYPESNGTWCFPGIGEFQCYDR YMLSSLKAAAEAVGKPEWGNAGPSDSGSYKDWPEDTPFFRREGGWNTEYGQFFMSWYSQMLLEHGERILSAATGVFTASPGVKISVKVAGIHWHYGTRSH AAELTAGYYNTRQHDGYQPIARMLGRHGAVLNFTCVEMRDHEQPQDAQCRPEGLVQQVAAAAQEAGIGLAGENALPRYDETAHDQVVATAAEKAEEERMV AFTYLRMGPDLFQPDNWRRF |
Full Sequence |
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Protein Sequence Length: 369 Download |
MGFLEEMDQG PGTWAYTDRS GRRNYEYVSL GCDALPVLKG RTPIQCYADF MRAFRDHFAT 60 YMGNTIVEIQ VGMGPAGELR YPSYPESNGT WCFPGIGEFQ CYDRYMLSSL KAAAEAVGKP 120 EWGNAGPSDS GSYKDWPEDT PFFRREGGWN TEYGQFFMSW YSQMLLEHGE RILSAATGVF 180 TASPGVKISV KVAGIHWHYG TRSHAAELTA GYYNTRQHDG YQPIARMLGR HGAVLNFTCV 240 EMRDHEQPQD AQCRPEGLVQ QVAAAAQEAG IGLAGENALP RYDETAHDQV VATAAEKAEE 300 ERMVAFTYLR MGPDLFQPDN WRRFAAFVKR MSGAGKRDMC REQVEREASG VAHATQPLVH 360 EAAVALTN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 5.0e-88 | 16 | 333 | 324 | + beta-amylase | ||
PLN02161 | PLN02161 | 2.0e-95 | 16 | 332 | 323 | + beta-amylase | ||
PLN02801 | PLN02801 | 4.0e-120 | 16 | 331 | 323 | + beta-amylase | ||
PLN02803 | PLN02803 | 2.0e-172 | 4 | 337 | 334 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 4 | 368 | 370 | + beta-amylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29617.1 | 0 | 4 | 368 | 209 | 572 | beta-amylase [Zea mays] |
GenBank | EAY88485.1 | 0 | 4 | 368 | 193 | 556 | hypothetical protein OsI_09956 [Oryza sativa Indica Group] |
RefSeq | NP_001048926.1 | 0 | 4 | 368 | 194 | 557 | Os03g0141200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148159.1 | 0 | 4 | 368 | 210 | 573 | beta-amylase [Zea mays] |
RefSeq | XP_002468533.1 | 0 | 4 | 368 | 201 | 564 | hypothetical protein SORBIDRAFT_01g047500 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 16 | 358 | 123 | 461 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
PDB | 1q6c_A | 0 | 16 | 358 | 123 | 461 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 16 | 358 | 123 | 461 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1q6d_A | 0 | 16 | 358 | 123 | 461 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 2dqx_A | 0 | 16 | 358 | 123 | 461 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV164966 | 290 | 61 | 350 | 0 |
EE162434 | 269 | 23 | 291 | 0 |
FL803620 | 232 | 24 | 255 | 0 |
HO779314 | 357 | 15 | 366 | 0 |
DV164014 | 266 | 26 | 291 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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