Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00056071m |
Family | GH14 |
Protein Properties | Length: 554 Molecular Weight: 60011.5 Isoelectric Point: 7.2055 |
Chromosome | Chromosome/Scaffold: 080914 Start: 2205 End: 4236 |
Description | beta-amylase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 378 | 515 | 4.9e-39 |
ELSAKIPFMHWWHGAQSRPAEVAAGFYKSNRKNGYSPVAKMFARHGCTMVVPGMDVCMNKQHHSAGSSPDQLLVQIKNACRRHGARIAGENASLVMTHTS SFSRIRSNILTTELMRPCHFTYQRMGADFFSPDHFPHF | |||
GH14 | 82 | 381 | 0 |
FVGLPIDSVTDGATVNGAAAVAAGIRAVRLLGADGVELPVFWSVAQPESPDRFSWAGYRAVADMVRAEGLSLRVSLRAHGTPGGGVPTLPAWVSGVAADD PDIFFTDRSGARHEGCLSFAIDELPVLHGKSPLQLYEAFFRSFAAAFEDFFDDSTITDVTVGLGVHGVLRYPSYPPGSDAGKFTGVGEFQCYDKYMLAQL RREAEEAGNAMWGLSGPHDAPRYHESPNSCGFFRERGGSWETPYGDFFLSWYAGQLVGHGDRVLGVASAVFGGKPAELSAKIPFMHWWHGAQSRPAELSA |
Full Sequence |
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Protein Sequence Length: 554 Download |
METAPMLLLL QRAAAPPSGW RRQAVRGQDG RGAPNRVAFR RARQGGGCRD LRAAGLGWFF 60 GGGGDHNNKN HEVDEFAPAR LFVGLPIDSV TDGATVNGAA AVAAGIRAVR LLGADGVELP 120 VFWSVAQPES PDRFSWAGYR AVADMVRAEG LSLRVSLRAH GTPGGGVPTL PAWVSGVAAD 180 DPDIFFTDRS GARHEGCLSF AIDELPVLHG KSPLQLYEAF FRSFAAAFED FFDDSTITDV 240 TVGLGVHGVL RYPSYPPGSD AGKFTGVGEF QCYDKYMLAQ LRREAEEAGN AMWGLSGPHD 300 APRYHESPNS CGFFRERGGS WETPYGDFFL SWYAGQLVGH GDRVLGVASA VFGGKPAELS 360 AKIPFMHWWH GAQSRPAELS AKIPFMHWWH GAQSRPAEVA AGFYKSNRKN GYSPVAKMFA 420 RHGCTMVVPG MDVCMNKQHH SAGSSPDQLL VQIKNACRRH GARIAGENAS LVMTHTSSFS 480 RIRSNILTTE LMRPCHFTYQ RMGADFFSPD HFPHFMEFVR SVVCGEWNED DGPADEDRAM 540 AAASGSAKAA TEA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02161 | PLN02161 | 4.0e-68 | 81 | 522 | 450 | + beta-amylase | ||
PLN02905 | PLN02905 | 4.0e-68 | 115 | 520 | 417 | + beta-amylase | ||
PLN00197 | PLN00197 | 1.0e-81 | 81 | 520 | 449 | + beta-amylase; Provisional | ||
PLN02801 | PLN02801 | 4.0e-82 | 81 | 520 | 451 | + beta-amylase | ||
PLN02803 | PLN02803 | 1.0e-98 | 81 | 522 | 447 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN35504.1 | 0 | 1 | 553 | 1 | 530 | unknown [Zea mays] |
GenBank | ADD91317.1 | 0 | 74 | 538 | 78 | 514 | chloroplast beta-amylase [Musa acuminata AAA Group] |
GenBank | EAZ05063.1 | 0 | 21 | 542 | 16 | 520 | hypothetical protein OsI_27252 [Oryza sativa Indica Group] |
RefSeq | NP_001060573.1 | 0 | 21 | 542 | 16 | 520 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002463351.1 | 0 | 1 | 551 | 1 | 530 | hypothetical protein SORBIDRAFT_02g042220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1q6g_A | 0 | 81 | 519 | 14 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1fa2_A | 0 | 81 | 522 | 15 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
PDB | 1q6d_A | 0 | 81 | 519 | 14 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1wdr_A | 0 | 81 | 519 | 14 | 438 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1wdp_A | 0 | 81 | 519 | 14 | 438 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO781436 | 412 | 127 | 538 | 0 |
HO796964 | 397 | 142 | 538 | 0 |
EG631213 | 356 | 182 | 537 | 0 |
EB706242 | 156 | 383 | 538 | 0 |
HO781436 | 57 | 79 | 134 | 0.47 |
Sequence Alignments (This image is cropped. Click for full image.) |
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