| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00056353m |
| Family | AA1 |
| Protein Properties | Length: 325 Molecular Weight: 36015.9 Isoelectric Point: 6.8364 |
| Chromosome | Chromosome/Scaffold: 075010 Start: 2409 End: 3383 |
| Description | laccase 5 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 2 | 325 | 2.20004e-42 |
| TYLLRVINAALFTEFYLKIAGHKLTVVAADANYVNPYTTDTIAIAPGETLDVLVVADAPPGKYCMVAVALQSPKPDQQLPFFMTSGTVQYSHKNGTSGHH NVAPVVPDLPDQHDTMTTYYFHGNLTSLRQPQVPVHPDEYFFITLSDGSICRHGRQSCKRSGSNESILAVAMNNVSFQIPRSVAAPLLESHYYHRNNDTA SIGGVDLFMLPNSPPRVFNFTDHSLVPDGPKEAQLEATEKRMVGRRFRHGTAVEVVFQNTALMQTGSHPMHLHGHDMFVLAQDYGIYDEVKDVAKYNLVD PPVKNTVVVPRLGWVALRFIADNP | |||
| Full Sequence |
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| Protein Sequence Length: 325 Download |
| MTYLLRVINA ALFTEFYLKI AGHKLTVVAA DANYVNPYTT DTIAIAPGET LDVLVVADAP 60 PGKYCMVAVA LQSPKPDQQL PFFMTSGTVQ YSHKNGTSGH HNVAPVVPDL PDQHDTMTTY 120 YFHGNLTSLR QPQVPVHPDE YFFITLSDGS ICRHGRQSCK RSGSNESILA VAMNNVSFQI 180 PRSVAAPLLE SHYYHRNNDT ASIGGVDLFM LPNSPPRVFN FTDHSLVPDG PKEAQLEATE 240 KRMVGRRFRH GTAVEVVFQN TALMQTGSHP MHLHGHDMFV LAQDYGIYDE VKDVAKYNLV 300 DPPVKNTVVV PRLGWVALRF IADNP |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00394 | Cu-oxidase | 1.0e-23 | 2 | 68 | 67 | + Multicopper oxidase. Many of the proteins in this family contain multiple similar copies of this plastocyanin-like domain. | ||
| PLN02191 | PLN02191 | 2.0e-27 | 2 | 325 | 329 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 9.0e-29 | 2 | 325 | 338 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 2.0e-35 | 2 | 325 | 330 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03389 | laccase | 9.0e-78 | 2 | 325 | 331 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK92654.1 | 0 | 2 | 325 | 191 | 515 | AC079634_15 Putative laccase [Oryza sativa Japonica Group] |
| RefSeq | NP_001064399.1 | 0 | 2 | 325 | 235 | 559 | Os10g0346300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146681.1 | 0 | 2 | 325 | 235 | 559 | hypothetical protein LOC100280281 [Zea mays] |
| RefSeq | XP_002449982.1 | 0 | 2 | 325 | 227 | 555 | hypothetical protein SORBIDRAFT_05g026630 [Sorghum bicolor] |
| RefSeq | XP_002457562.1 | 0 | 2 | 325 | 225 | 550 | hypothetical protein SORBIDRAFT_03g009410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 1e-24 | 2 | 325 | 213 | 500 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
| PDB | 1asq_A | 1e-24 | 2 | 325 | 213 | 500 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
| PDB | 1asp_B | 1e-24 | 2 | 325 | 213 | 500 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
| PDB | 1asp_A | 1e-24 | 2 | 325 | 213 | 500 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
| PDB | 1aso_B | 1e-24 | 2 | 325 | 213 | 500 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CA146254 | 229 | 104 | 325 | 0 |
| FL915596 | 244 | 2 | 239 | 0 |
| JK593019 | 225 | 104 | 325 | 0 |
| EG387833 | 275 | 55 | 325 | 0 |
| DV520643 | 207 | 2 | 198 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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