Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00056401m |
Family | GH28 |
Protein Properties | Length: 501 Molecular Weight: 51303.4 Isoelectric Point: 7.6121 |
Chromosome | Chromosome/Scaffold: 075737 Start: 2138 End: 3974 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 126 | 468 | 0 |
WDTACADDGDGVVLAAAGYSFLVHATVFTGPCQGSVTIQLDGTIVAPSDPDKWPANTKRNWLVFYNAHGTTLRGAGLIDGKGQKWWELPCKTDKGQGGSS GHGASCDSPVALRFFSSNNVKVQGLRVQNSPEFHFRFDGCRGVVASGLSISSPAQSPNTDGIHIENTQDVLVADTAVSNGDDCVSIGAGALNVRIENVTC GPGGHGISIGSLGKQGSRACVANVTVRNAVIRRSDNGVRIKTWQGGSGSVSGVAFENVRMDAVRNPIIIDQYYCLSRTCENATTAVLVSGVSYAGIRGTY DARSPPIHFGCSDAVPCTNITLADVKLLPAAGQAVDDPFCWNV |
Full Sequence |
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Protein Sequence Length: 501 Download |
MEVSARTAVA LLLALAVASG CLCGGAQGRR HRHTKHTRHN SAHARAPAQA PGPASSRRHA 60 PPHARPVSPP APPPSSSSGS GGAYPTPGAA TEPAAGGAAA VYDVVKDFGA VGDGVADDTD 120 AIKTAWDTAC ADDGDGVVLA AAGYSFLVHA TVFTGPCQGS VTIQLDGTIV APSDPDKWPA 180 NTKRNWLVFY NAHGTTLRGA GLIDGKGQKW WELPCKTDKG QGGSSGHGAS CDSPVALRFF 240 SSNNVKVQGL RVQNSPEFHF RFDGCRGVVA SGLSISSPAQ SPNTDGIHIE NTQDVLVADT 300 AVSNGDDCVS IGAGALNVRI ENVTCGPGGH GISIGSLGKQ GSRACVANVT VRNAVIRRSD 360 NGVRIKTWQG GSGSVSGVAF ENVRMDAVRN PIIIDQYYCL SRTCENATTA VLVSGVSYAG 420 IRGTYDARSP PIHFGCSDAV PCTNITLADV KLLPAAGQAV DDPFCWNVYG SAATPTVPPV 480 ACLMDGAPGG HADKSSLKCY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-65 | 145 | 479 | 340 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-67 | 125 | 483 | 365 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 8.0e-79 | 145 | 452 | 310 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-89 | 146 | 452 | 307 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-109 | 123 | 485 | 365 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD86981.1 | 0 | 101 | 500 | 17 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAY73623.1 | 0 | 25 | 500 | 30 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
RefSeq | NP_001042805.1 | 0 | 25 | 500 | 30 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150436.1 | 0 | 1 | 500 | 1 | 499 | polygalacturonase [Zea mays] |
RefSeq | XP_002455500.1 | 0 | 1 | 500 | 1 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-21 | 184 | 444 | 56 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-21 | 184 | 444 | 56 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-21 | 184 | 444 | 56 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-21 | 184 | 444 | 56 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-21 | 184 | 444 | 56 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |