Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00056428m |
Family | GH28 |
Protein Properties | Length: 451 Molecular Weight: 48192.7 Isoelectric Point: 9.4197 |
Chromosome | Chromosome/Scaffold: 075479 Start: 1488 End: 4474 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 424 | 0 |
RRRGGTELRVPAGTWVTGSFNLTSHMTLFLARGAVLRATRDAAGWPLVEPLPSYGRGRELPGARYASFIGGDGLRDVVITGDMGVIDGQGEVWWNMWRQR TLQHTRPNLVEFMHSTGIHISNIVLKNSPFWNIHPVYCDNVVVTNMMILAPHDSPNTDGVDPDSSTNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSA GITIRRVRGSSPFSGIAIGSEASGGVRDVLVEDCSFFDSGYGIHIKTSVGRGGYIRNVTVDNVRLRGVRRGVRIAGDAGDHPDGRFSRLAVPAVDAVRIR NVWGVGVQQPGSLEGIRSSPFTRICLSNVKLFGGRDGAAWRCRDVRG |
Full Sequence |
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Protein Sequence Length: 451 Download |
MAASPPPRLA VAVLLAGALA LLVQTDQAAA AAATCAGAAQ AKRRPEVVSI AEFGGVGDGR 60 TLNTWAFRKA VYRIQHRRRR GGTELRVPAG TWVTGSFNLT SHMTLFLARG AVLRATRDAA 120 GWPLVEPLPS YGRGRELPGA RYASFIGGDG LRDVVITGDM GVIDGQGEVW WNMWRQRTLQ 180 HTRPNLVEFM HSTGIHISNI VLKNSPFWNI HPVYCDNVVV TNMMILAPHD SPNTDGVDPD 240 SSTNVCIEDS YISTGDDLVA IKSGWDEYGI AYGRPSAGIT IRRVRGSSPF SGIAIGSEAS 300 GGVRDVLVED CSFFDSGYGI HIKTSVGRGG YIRNVTVDNV RLRGVRRGVR IAGDAGDHPD 360 GRFSRLAVPA VDAVRIRNVW GVGVQQPGSL EGIRSSPFTR ICLSNVKLFG GRDGAAWRCR 420 DVRGAALGVH PWPCAELATS FASAAGSCSY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-18 | 161 | 336 | 179 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-24 | 43 | 335 | 308 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-25 | 48 | 445 | 414 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-27 | 145 | 422 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-49 | 47 | 336 | 313 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN33336.1 | 0 | 2 | 449 | 4 | 451 | unknown [Zea mays] |
GenBank | ACN36471.1 | 0 | 103 | 449 | 1 | 347 | unknown [Zea mays] |
GenBank | EAY85246.1 | 0 | 29 | 450 | 24 | 443 | hypothetical protein OsI_06620 [Oryza sativa Indica Group] |
RefSeq | NP_001046468.1 | 0 | 29 | 450 | 24 | 443 | Os02g0256100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451891.1 | 0 | 34 | 449 | 31 | 448 | hypothetical protein SORBIDRAFT_04g009310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9e-39 | 43 | 412 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-39 | 43 | 412 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-39 | 43 | 412 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-39 | 43 | 412 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 5e-20 | 39 | 351 | 148 | 496 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |