| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00056502m |
| Family | PL1 |
| Protein Properties | Length: 436 Molecular Weight: 46767.6 Isoelectric Point: 5.2391 |
| Chromosome | Chromosome/Scaffold: 074289 Start: 1040 End: 2706 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 131 | 324 | 0 |
| ITFARDMTIRPKEELVVSSYKTVDGRGAAVVVGDGGACFVLHNVNHVIIHGLAIRDCKPARSSSSSASGGLSDGDGITILSSTDVWVDHCTLEACTDGLI DVTEGSTRVTLTNNLLRNHDKAILLGHSDNFPDDKDMKVTVAYNRFGPGLVQRMPRCRFGLFHVINNDYINWQLYAIGGSASPTILSHGNRFLA | |||
| Full Sequence |
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| Protein Sequence Length: 436 Download |
| MAFLIFLCFS SFLHLSISMS SPSPLPVFSS AAGQEVVQDA VRSMNMSLHR RMLGDDDCGT 60 GNTVDDCWRC DPSWADNRQR LADCAIGFGR DAGGGKNGKT YVVTDPSDDD PAAPAPGTLR 120 YGLVQEEPLW ITFARDMTIR PKEELVVSSY KTVDGRGAAV VVGDGGACFV LHNVNHVIIH 180 GLAIRDCKPA RSSSSSASGG LSDGDGITIL SSTDVWVDHC TLEACTDGLI DVTEGSTRVT 240 LTNNLLRNHD KAILLGHSDN FPDDKDMKVT VAYNRFGPGL VQRMPRCRFG LFHVINNDYI 300 NWQLYAIGGS ASPTILSHGN RFLADKEKEV TKREEAPESE WSTWTWISEG DMMLNGAFFR 360 SSGSARPDVD TPSFAKSVSS VSLMTASAGV LSSSKEAGAY AYTGGGLGGA RPTLTSGPNT 420 LLSLGFVLYV LIYYS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-23 | 211 | 322 | 123 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-51 | 170 | 322 | 161 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-57 | 136 | 324 | 200 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF19195.1 | 0 | 2 | 395 | 3 | 403 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
| GenBank | ABV32549.1 | 0 | 36 | 395 | 39 | 409 | pectase lyase [Prunus persica] |
| DDBJ | BAE48664.1 | 0 | 36 | 395 | 39 | 409 | Pectate lyase [Prunus mume] |
| DDBJ | BAI94495.1 | 0 | 1 | 395 | 1 | 403 | pectate lyase [Dianthus caryophyllus] |
| RefSeq | NP_001055106.1 | 0 | 57 | 395 | 36 | 369 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 62 | 366 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 62 | 366 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 7e-19 | 137 | 323 | 56 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 1e-16 | 134 | 299 | 140 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 3e-16 | 134 | 299 | 140 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 18 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL903996 | 216 | 181 | 392 | 0 |
| FG606120 | 350 | 36 | 376 | 0 |
| HO778688 | 377 | 31 | 395 | 0 |
| FL903995 | 249 | 1 | 245 | 0 |
| DY278910 | 339 | 36 | 365 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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