Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00056704m |
Family | GT47 |
Protein Properties | Length: 437 Molecular Weight: 48784.2 Isoelectric Point: 9.8637 |
Chromosome | Chromosome/Scaffold: 078828 Start: 624 End: 2687 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 103 | 423 | 0 |
PVKIYMYDLPPKFTYGVVRSYTAARAPSGSADAAAVLPDEQLRYPGHQHLAEWWLFKDLLRRRPRDRPVARVDDPRDADLFYVPFFSSLSLVVNPIRPPA AANASGVAAAYSDEAMQDELLEWLERQPYWRRHWGRDHVFICQDPNALYRVIDWISNAILLVSDFGRLRTDQASLVKDVILPYSHRINSFKGDVGIDGRP SLLFFMGNRYRKEGGKVRDALFQILENEEDVTIKHGAQSRESRRAATRGMHSSKFCLHPAGDTPSACRLFDALVSLCVPVIVSDYIELPFEDVIDYSSIS IFVGTSKAVQPGYLTSMLRRV |
Full Sequence |
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Protein Sequence Length: 437 Download |
MWERGRPPRK PRPSPIIVPP PPPSPPPRLN LLLPRSLLAL AARAMPSRRP SPVLLLLLAL 60 ALALLFLLLS PSSPSASRLS RSLASGYASA SSSPASPAAP PAPVKIYMYD LPPKFTYGVV 120 RSYTAARAPS GSADAAAVLP DEQLRYPGHQ HLAEWWLFKD LLRRRPRDRP VARVDDPRDA 180 DLFYVPFFSS LSLVVNPIRP PAAANASGVA AAYSDEAMQD ELLEWLERQP YWRRHWGRDH 240 VFICQDPNAL YRVIDWISNA ILLVSDFGRL RTDQASLVKD VILPYSHRIN SFKGDVGIDG 300 RPSLLFFMGN RYRKEGGKVR DALFQILENE EDVTIKHGAQ SRESRRAATR GMHSSKFCLH 360 PAGDTPSACR LFDALVSLCV PVIVSDYIEL PFEDVIDYSS ISIFVGTSKA VQPGYLTSML 420 RRVSSERILE YQREINK |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-60 | 104 | 423 | 331 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG27631.1 | 0 | 104 | 437 | 60 | 393 | exostosin-like [Zea mays] |
GenBank | ACN31783.1 | 0 | 104 | 437 | 104 | 437 | unknown [Zea mays] |
GenBank | EEE67431.1 | 0 | 1 | 437 | 1 | 439 | hypothetical protein OsJ_24780 [Oryza sativa Japonica Group] |
RefSeq | NP_001060019.1 | 0 | 1 | 437 | 1 | 439 | Os07g0567000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002460871.1 | 0 | 43 | 437 | 43 | 437 | hypothetical protein SORBIDRAFT_02g036640 [Sorghum bicolor] |